Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1004 ATGAAATTGCGGTTTCCAGAAGAGAGGAGAGGAGCAATGAAGGCCACCGTGAGTTCTTGCTTTTCTTCTATTTCCATCATCCCTCCCTCGTCTCTAGTCCACGACCCTCACTCTCCATTCCCTCCAGTCCGTCTTCGTTCAATTCCTGCTTTTACTCTCAGAACGCACACCACTACTTCTTTCAGACTCGTCAGAGTTCTCCAACGAGGAGTTGGACTCGTGTCTCCCGACGACCTGTCTCTACCGGAGCCCGTGATTGATGTGAAAGAGGAAGAGGTGTTTGCAGTGGTTGATGGAGTCGCAGGAACCAAAGCGGAAGAGAAAACCCTAAAGGCCCCCACTAGAGTTAAGAAGAAGGGAGGTGAAGGAGAGAGTGATGATAATAGGTTCAAGCTGCGTAACGGAAGAGAGGTTTTTGAGGAAAAAGCATACCTTGTTGCTGTTGAGCTCAAAGGTGACATGGAGTATTCCTTTGGCATAGAAGAATCACTTAAGGAACTGGCCCAGTTAGCTGACACTGCTGGACTTATGGTTGTTGGTTCTACATCTCAAAAACTTAGTACTCCAAATCGAAGGACATATATTGGATCTGGCAAGGTTGCAGAAATTAAGAGTGCAATCCATGCACTGGATGTTGAGACCGTAATATTTGATGATGAGCTTTCAGCAGGGCAATTGCGTAATTTGGAAAAGGCTTTTGGTGGAGATGTTAGAGTCTGTGACCGCACTGCCCTCATCCTTGATATCTTTAACCAGCGAGCAGCAACACATGAAGCAGCTTTACAGGCAAATGTTGCATTGGCACAAATGGAATATCAGTTGCCACGTCTCACGAAGATGTGGACTCACCTTGAGCGTCAAGCAGGAGGCAAGGTGAAAGGAATGGGTGAGAAACAAATTGAAGTGGATAAGCGTATCTTACGCACTCAAATTGGTGCTCTTAAAAAAGAGCTAGAATCAGTTCGGCAACATCGGAAGCAGTATAGAAACCGGCGTTTCTCTGTGCCCGTTCCTGTTGTATCTTTGGTTGGGTACACAAATGCTGGAAAGAGTACACTCCTAAATAGATTAACTGGGTCTAATGTTCTTGCTGAGGATCGGTTATTTGCAACACTTGATCCAACTACAAGAAGGGTGCAGATGAAGAATGGTAGGGAATTTCTTCTCACAGATACAGTTGGATTCATCCAAAAGTTACCAACTATGCTGGTTGCGGCCTTCAGAGCAACATTGGAGGAGATATCAGAATCATCACTTTTGGTGCATGTGGTGGACATTAGCCATCCACTAGCAGAGCAGCAGATAGATGCTGTGGACAAAGTTCTGTCAGAATTAGATGTGTTGTCAATTCCAAGATTGATGGTCTGGAACAAGGTTGATAAAGCTAGCAATCCTCAAAAAATCAAATTAGAAGCAGAGAAAAGAGAAGATGTTGTCTGCATATCTGCTTTAAATGGTGATGGATTGAATGAATTCTGCAATGCAGTTCAGGAAAAATTGAAGGATTCTATGGTTTGGGTGGAAGCTTTGGTCCCATTTGACAAAGGGGAACTCCTCAGTACCATTCATCAGGTTGGAATGGTGGAGAGAACTGAATATACAGAAAACGGGACATTGGTCAAGGCACATGTTCCCCTTCGGTTCGCAAGGCTACTCACCCCCATGAGGCAACTCTGTAAATCATGA 1686 44.78 MKLRFPEERRGAMKATVSSCFSSISIIPPSSLVHDPHSPFPPVRLRSIPAFTLRTHTTTSFRLVRVLQRGVGLVSPDDLSLPEPVIDVKEEEVFAVVDGVAGTKAEEKTLKAPTRVKKKGGEGESDDNRFKLRNGREVFEEKAYLVAVELKGDMEYSFGIEESLKELAQLADTAGLMVVGSTSQKLSTPNRRTYIGSGKVAEIKSAIHALDVETVIFDDELSAGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEAALQANVALAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRTQIGALKKELESVRQHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNRLTGSNVLAEDRLFATLDPTTRRVQMKNGREFLLTDTVGFIQKLPTMLVAAFRATLEEISESSLLVHVVDISHPLAEQQIDAVDKVLSELDVLSIPRLMVWNKVDKASNPQKIKLEAEKREDVVCISALNGDGLNEFCNAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTENGTLVKAHVPLRFARLLTPMRQLCKS* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11188321 11195618 - Vvi18g1004 Vvi18g1004 780707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1004 561 CDD HflX 297 500 IPR030394 GO:0005525
Vvi18g1004 561 Pfam GTP-binding GTPase Middle Region 253 332 IPR032305 -
Vvi18g1004 561 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 338 504 IPR030394 GO:0005525
Vvi18g1004 561 TIGRFAM GTP_HflX: GTP-binding protein HflX 143 500 IPR016496 GO:0005525
Vvi18g1004 561 TIGRFAM small_GTP: small GTP-binding protein domain 339 495 IPR005225 GO:0005525
Vvi18g1004 561 Pfam 50S ribosome-binding GTPase 340 458 IPR006073 GO:0005525
Vvi18g1004 561 Coils Coil 311 331 - -
Vvi18g1004 561 PANTHER GTP-BINDING PROTEIN 6-RELATED 114 548 - -
Vvi18g1004 561 PRINTS GTP1/OBG GTP-binding protein family signature 340 360 IPR006073 GO:0005525
Vvi18g1004 561 PRINTS GTP1/OBG GTP-binding protein family signature 407 425 IPR006073 GO:0005525
Vvi18g1004 561 Hamap GTPase HflX [hflX]. 164 529 IPR016496 GO:0005525
Vvi18g1004 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 510 IPR027417 -
Vvi18g1004 561 Pfam HflX C-terminal domain 468 539 IPR045498 -
Vvi18g1004 561 Gene3D - 254 323 - -
Vvi18g1004 561 Gene3D - 337 505 IPR027417 -
Vvi18g1004 561 Pfam GTP-binding GTPase N-terminal 161 250 IPR025121 -
Vvi18g1004 561 Gene3D - 154 253 IPR042108 -
Vvi18g1004 561 PANTHER GTP-BINDING PROTEIN HFLX 114 548 IPR016496 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1004 K03665 hflX; GTPase - vvi:100247233 1058.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1004 . . . Bda03g00271 . Bpe04g00226 Bma04g00221 . . . . Cma09g00132 . . . Cpe06g00092 . . . . . . . . . . . . . . . . . Cone17ag1363 Cone20ag0118 Lsi04g01703 Csa03g04243 Chy04g00472 . . . . . . . . . . Cmo01g01996 Cmo09g00129 . . . Car09g00118 . . . . . . . . . Cla05g01909 Cam05g2046 Cec05g2055 Cco05g2110 Clacu05g2039 Cmu05g1918 Cre05g2040 . . . Cme04g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011128 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30