Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1005 ATGGTCTCCCAAGAATCATCCCCCAACCCAACTTCAAGCATTTTGCACCAGTTCATCATCTCTGACTCCTTCACGAGTCCAAACCAATTTGAAAACCATCATTTTGATGCTTATGGATCTCATTTAAGAGGCAGTAACACATTTCCTCAGTCTCTCGGCGTCTTGCCCAGCATTCAGTCTCTCGGAGAAAGAATGTCTAGATCAATAGACCTTGTTCAAGCTCCTGCAGTAGGAGAAGAGTCTGAGATCAGCCACACCAGACACTTCATGGATCTTCTTGGAGCTGCAAATGAGTCCAATCACCAAGCTCACAGGCTCTCGCTCTCCCTAGGCTCTCATGTGCTAATGCCTTCCGTTCATTACAGGCAAAGACCCTTAAACTCAGACTTCGTGAGCTCCAATTACTTATTTTCTGGCGAAGAAGCAAGAGAAGCTTGCAACCCAGGAGTGGAGCGCCTGTGTGATGATTATTCTTATGTGAGTAGCGCCTTTGCTACACCTTCAACCTCGCTCAATCGCTCTTGTTCCACTTCCTATGGAACAGAGTCTTTTGTCAATGCAGTCGGGAACTCAAGATATTTAAGACCAACTCAGTCCCTCCTTGAAGAAGTTGTTAACGCGGGTGGCAAGGCCATTGACTTGAGCAATGAAAAATATATCGGTAGGTTGTCCCGAAGTGGCAGAAGAGGAGCTCTAGGATTTGCTTCTGAGCTAAAAGCAGAATTGTGTGGGAATGGATCATTATCAGCTGAAAAACAAGATATTCAGATAGAAATAGCGAAACTTATTGGCTTGTTGGAGGAGGTTGAGAGCAGATATGAGGAGTACTATCATCAAATGGAAGACGTGGTATCCTCCTTCGAGGTGATAGCAGGTGTGGGAGCAGCCAAGTCTTACACTGCTCTTGCCCTTCAGGCCATGTTTAGACATTTTTGCAGCTTGAGAGATGCCATTATATCTCAAATCAATGTGGCAAGAAGAAAGCTTTCCCATGATTTGCCTAAAATCAGCACAGGATTTTCACAACTTAGCTTGTTTGACCAAGAGGGTAGAAACAACCGAATGACTCTTCAACAGCTGGGAATGTTCCAAAGCCACCGGCAAGCATGGCGACCCATAAGAGGATTGCCGGAGACCTCTGTGGCTATCCTTCGGTCATGGCTCTTCGAACACTTTCTCCACCCTTACCCAAATGACTCTGAGAAGTTAATGTTGGCATCACAGACAGGCCTGACTAAGAACCAAGTCTCAAATTGGTTCATAAATGCTCGGGTTAGACTATGGAAGCCTATGATAGAAGAAATGTACAAAGAGGAGTTTGCAGAGTCTTCAGTAGAGTCGGATCCATTAGTAGCGAGCAGTTCCACAAGGGAAGGAGGTGCGAGTGATAATGGAGAGGGATGGAAAGGGTAG 1413 45.65 MVSQESSPNPTSSILHQFIISDSFTSPNQFENHHFDAYGSHLRGSNTFPQSLGVLPSIQSLGERMSRSIDLVQAPAVGEESEISHTRHFMDLLGAANESNHQAHRLSLSLGSHVLMPSVHYRQRPLNSDFVSSNYLFSGEEAREACNPGVERLCDDYSYVSSAFATPSTSLNRSCSTSYGTESFVNAVGNSRYLRPTQSLLEEVVNAGGKAIDLSNEKYIGRLSRSGRRGALGFASELKAELCGNGSLSAEKQDIQIEIAKLIGLLEEVESRYEEYYHQMEDVVSSFEVIAGVGAAKSYTALALQAMFRHFCSLRDAIISQINVARRKLSHDLPKISTGFSQLSLFDQEGRNNRMTLQQLGMFQSHRQAWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFAESSVESDPLVASSSTREGGASDNGEGWKG* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11196525 11198339 - Vvi18g1005 Vvi18g1005 780708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1005 470 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 2 448 - -
Vvi18g1005 470 SMART HOX_1 370 434 IPR001356 GO:0003677
Vvi18g1005 470 MobiDBLite consensus disorder prediction 447 461 - -
Vvi18g1005 470 Pfam Associated with HOX 188 318 IPR006563 -
Vvi18g1005 470 Pfam Homeobox KN domain 387 426 IPR008422 GO:0003677|GO:0006355
Vvi18g1005 470 CDD homeodomain 370 431 IPR001356 GO:0003677
Vvi18g1005 470 Coils Coil 252 272 - -
Vvi18g1005 470 MobiDBLite consensus disorder prediction 441 470 - -
Vvi18g1005 470 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 448 - -
Vvi18g1005 470 SUPERFAMILY Homeodomain-like 375 437 IPR009057 -
Vvi18g1005 470 SMART prehox3 182 320 IPR006563 -
Vvi18g1005 470 Gene3D - 364 445 - -
Vvi18g1005 470 ProSiteProfiles 'Homeobox' domain profile. 367 430 IPR001356 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14255 PF07526 POX 8.60E-37 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1005 - - vvi:100252354 926.391