Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1007 ATGCAATCTGTTGGTCTACAGTTAAAAAATGCTACAGGTGCTCCAACTGGCAATTTTGTTACCGGAAATCCTCAGATAGTGCCAAGGACACAGCTAGGCATTCTAGATGCTGAACAGAATTTCCTGCCTCAGCGATTATCTCTCAGCCTCAGCACACAGATACCATCCACAGTTCCACTGGCTTCATTTCAGTACCAGTATGTGAACCCAGGTCTCTCATCACGTTTTGGTTCTTATGTTTCATCTTCAGCGGAGAGAACAATATCTTGTGAAGGTGATGAAAGTTCTCAAGCTAAGGAGTTTAGAAATGATGAATACCTACCATCTAGTTTCCCAGGAACTGATCAGAGTTCTGTCAAAACAGAGGCCTTGTGCAATCCTCGATACTCAGAAATCCCTAAAGTAACTGGTGCTGATCAGTGTCTCTATGAATCTTTTGGTCCTGCAAACACTGTCTTGAACTCCAAATTCCTCAAGTCAGTACAGCAATTGCTTGACGAAGTAGTTAATGTCCGAAAAACTTTGAAGCAGCAGGAGTTTGACAAACACCATAAGTTCCATGGGATTGACCCTAATGGGTTGGTTACCAATTCCTCCTGTAAGCTTTCATCCACAGAACGGCAGGATTTGGAGCACAAGAAAGCCAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAAACAGTATTATGATCAGACACAAATTGTGGGATCCTTTTTTGACATGTTAGCTGGGTTTGGGGCGGCAAAAACATACATGGCACTTGCCCTGCAAAGAATTTCCTGCCACTTCCGCTGTTTGCGTGATGCAATCAGTGGCCAGATTCGAATAACCTGCAGAAACCTTGGGGAGCAAGATACTTCACCAAATGGTCTAGGTGGTGGAATGTCTCGTCTTGGCTATGTAGACCAGCAGCTCAGACAACAGAGAGCTCTTCAGCAGTTTGGTGGGATGCGACATGCGTGGAGGCCACAGAGGGGACTGCCTGAAAGTTCTGTTTCAATCCTTCGCACATGGCTGTTTGAGCACTTTCTTCACCCTTATCCAAAGGATTCAGAGAAAATCATGCTAGCTAGGCAGACCGGCTTGACCAGGAGCCAGGTTGCAAACTGGTTTATAAATGCACGGGTGCGTCTTTGGAAGCCCATGGTTGAGGAGATTTATAAAGAAGAGATTGGTGATTCAGAGACAAAGTCTAAATCTTCCCCGGAGAGTCCTCCAAAAGAACCAAGAGATGATTCCTGGGCATCTGAGGATAAGGGAGAAGAGTTGCAAGAAACTATGACATCCACAGCTGCTGCAGGTGGCCACCTGGGTCAATCACATAACATGACTCTTATGGCTGCTACATACCACATATCAGAGTTGAGTGACCTAGGAGTTGGCAGTCAGGTGTCACTTGCATTGGGGTTGCGGCATTGTGAAAGCGATGTGCCATCCATTTCTGGGGGGCCCCTTATTAGAGGGGGTGATATTGCTGCTTCTGTGGGCCCTGACACTGCCGAATATAATTGCATGGATTCAGGAAACCAGCGACATAGGTTTGGCAAACCCCATCTCATACATGATTTTGTAGTCTGA 1587 45.75 MQSVGLQLKNATGAPTGNFVTGNPQIVPRTQLGILDAEQNFLPQRLSLSLSTQIPSTVPLASFQYQYVNPGLSSRFGSYVSSSAERTISCEGDESSQAKEFRNDEYLPSSFPGTDQSSVKTEALCNPRYSEIPKVTGADQCLYESFGPANTVLNSKFLKSVQQLLDEVVNVRKTLKQQEFDKHHKFHGIDPNGLVTNSSCKLSSTERQDLEHKKAKLLSMLDEVDKRYKQYYDQTQIVGSFFDMLAGFGAAKTYMALALQRISCHFRCLRDAISGQIRITCRNLGEQDTSPNGLGGGMSRLGYVDQQLRQQRALQQFGGMRHAWRPQRGLPESSVSILRTWLFEHFLHPYPKDSEKIMLARQTGLTRSQVANWFINARVRLWKPMVEEIYKEEIGDSETKSKSSPESPPKEPRDDSWASEDKGEELQETMTSTAAAGGHLGQSHNMTLMAATYHISELSDLGVGSQVSLALGLRHCESDVPSISGGPLIRGGDIAASVGPDTAEYNCMDSGNQRHRFGKPHLIHDFVV* 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11201409 11205044 - Vvi18g1007 Vvi18g1007 780710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1007 528 MobiDBLite consensus disorder prediction 394 425 - -
Vvi18g1007 528 SUPERFAMILY Homeodomain-like 325 390 IPR009057 -
Vvi18g1007 528 Coils Coil 158 178 - -
Vvi18g1007 528 ProSiteProfiles 'Homeobox' domain profile. 321 384 IPR001356 GO:0003677
Vvi18g1007 528 SMART prehox3 146 275 IPR006563 -
Vvi18g1007 528 Coils Coil 207 227 - -
Vvi18g1007 528 Pfam Homeobox KN domain 341 380 IPR008422 GO:0003677|GO:0006355
Vvi18g1007 528 SMART HOX_1 324 388 IPR001356 GO:0003677
Vvi18g1007 528 Gene3D - 321 399 - -
Vvi18g1007 528 Pfam Associated with HOX 152 274 IPR006563 -
Vvi18g1007 528 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 22 479 - -
Vvi18g1007 528 CDD homeodomain 324 385 IPR001356 GO:0003677
Vvi18g1007 528 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1007 - - - vvi:100257488 874.774
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g4 Vvi18g1007 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1007 . Blo12g00899 . Bda03g00272 . . Bma04g00222 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1939 Cone7ag1851 . . . . . . . . . Bda01g01513 Bpe02g01709 . Bma01g00745 Bma05g00135 . . . . . . . . . . . . . . . . Cla11g00386 Cam11g0432 Cec11g0426 Cco11g0420 Clacu11g0554 Cmu11g0411 Cre11g0897 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006502 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14256 PF07526 POX 7.30E-42 No_clan Vvi TF