Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1012 ATGTTTTCCAGGCAATCCTATGAACACTCACTTTTTTGCTGCATAAATTCCTCTCATATCTTTCCTCTAACTCAGCGTAAAACGGATCCACCCCATCACGCATTCAGTTTCGACAACCCCATATCAGTTGGGCCATGGGGAGGTCAAGATGGATTGCGCTGGGACGATGGGGTGTACTCTACAGTTAGGCAGTTGGTGATAGCTCATGGAGTTGGTATCGACTCCATCTTGATTGAATATGATAAGAACGGAAGCTCGGTGTGGTCGGAAAAGCATGGTGGAAGTGGAGGCACTAGAACCAACAGGGTCAAGCTTGATAGCCCGGATGAGTTTCTAACTTCAATTCATGGACACTATGGTAGCTTACTTGAAAGGGGGCCAGTCTTTGTTCGATCACTTACTTTGGAGAGCAACAAGAGAACATATGGTCCATTTGGCATTGAACAAGGAATATATTTCTCTTTACCAACGACTGGGGGCAAGATCATTGGGTTCCATGGCAAGTCGGGCTGGTATCTTGATGCAATTGGAGTTCATTTGAAGCCTCATAAGCCAAGTCCCTTTAAATCAAGTGTTCAGACGCAAAATTATTTTTCTACTGGTACTGATAGAGTTGCGTACTCAGTAGTACAAGGAGGTGTAAGCAGAGGCTATGATGTTATTGTTGCTTTTAGACAGAAGGATGACTACAACAGCAATGGTTCAGCATACAATTTCCCAAACCAAACTTGTTATTCTGGAGAATCCAGTGATTCAGAAAAGGGCAAGGTGGGTGGTGTGAAAAAATTGTCATACAGCAATGTTTCACCACAGAATCTCTCAAGGCAAACTTCTAGGTCTGGAGAGTCCAGTGATGCTGAAACCAAAGGCAAGATTATTGGTGCTGTAGAGAGAGTGCCCTCAAAAGTTAGAGGCGCAGTGACATATGGACCTTGGGGTGGTAAGGGTGGTTTTGTGTTTGATGATGGAGTCTCCACAGGTGTTCGGCAAATCAATCTATCGCGCAACATTGGAATTGTGTCAATAAAAGTTTTGTATGACCAGAATGGGCAAGCTGTATGGGGAAGCAAAAATGGCGGAACAGGAGGATTTAGAAATGACAAGATAGTAATCGATTATCCATACGAAGTCCTAACGCATATAACAGGCTACTATGCGCCTACAATGGTCATGGGACCTAACATCATCAAGTCACTCACCTTCCACACAACAAAAACCAAATATGGGCCATTTGGAGAAGAACAAGGAACTCCTTTTTCCTCCAACATAAAGGAAGGGGTGATCGTCGGATTCCATGGGAGAACAGGGTTGTTCATAGATGCTATAGGTGTTCATATGATCGAAGGGAAAGCGAGACCGCCAACACGTCCTCCCTCCAACAAACAACTCAACCAAAACCAAAGCCAAATCCAAGTACTGGACAACGCTGCTGAAGTGGATAGGCCACTATGGTACTCGAATAAGTCAGTACCAACCAAGGGAGGACCATTTGAAGAGGTTGGCAGTGGAGTGGTCAAAGAACCAGCCCCATGTGGACCAGGTCCATGGGGTGGGGATGGAGGGCGGCCATGGGACGATGGAGTATTTTCCGGGATTAAGCAGATCTATCTGACAAGAGCAGAAGCCATTTGCTCGATACAGATTGAGTATGCTAGGAATGGACAGTCTATTTGGTCCACAAAACATGGAGGAGACTACGGAACCACCACACATAGGGTGAAATTGGAGTACCCACATGAAGTAGTGAGTTGTATATGTGGGTATTATGGTCCCATCAGCATAAACGAGCCGTGGAACGCTATCAAGTCACTGACTTTTTATACCAGCCGAGGAAAGTATGGGCCGTTTGGTGAGGAAATAGGAACCTATTTTACTTCAACGAGGACAGAAGGAAAGGTGGTTGGCTTCCATGGAAGGAGCAGCCTGTACTTGGATGCCATTGGAGTGCACATGCAACACTGGTTAGGAGATCAAAGGACCCTGAAGCCCAATCTCTTCAAAATTTTCTACTGA 2013 45.36 MFSRQSYEHSLFCCINSSHIFPLTQRKTDPPHHAFSFDNPISVGPWGGQDGLRWDDGVYSTVRQLVIAHGVGIDSILIEYDKNGSSVWSEKHGGSGGTRTNRVKLDSPDEFLTSIHGHYGSLLERGPVFVRSLTLESNKRTYGPFGIEQGIYFSLPTTGGKIIGFHGKSGWYLDAIGVHLKPHKPSPFKSSVQTQNYFSTGTDRVAYSVVQGGVSRGYDVIVAFRQKDDYNSNGSAYNFPNQTCYSGESSDSEKGKVGGVKKLSYSNVSPQNLSRQTSRSGESSDAETKGKIIGAVERVPSKVRGAVTYGPWGGKGGFVFDDGVSTGVRQINLSRNIGIVSIKVLYDQNGQAVWGSKNGGTGGFRNDKIVIDYPYEVLTHITGYYAPTMVMGPNIIKSLTFHTTKTKYGPFGEEQGTPFSSNIKEGVIVGFHGRTGLFIDAIGVHMIEGKARPPTRPPSNKQLNQNQSQIQVLDNAAEVDRPLWYSNKSVPTKGGPFEEVGSGVVKEPAPCGPGPWGGDGGRPWDDGVFSGIKQIYLTRAEAICSIQIEYARNGQSIWSTKHGGDYGTTTHRVKLEYPHEVVSCICGYYGPISINEPWNAIKSLTFYTSRGKYGPFGEEIGTYFTSTRTEGKVVGFHGRSSLYLDAIGVHMQHWLGDQRTLKPNLFKIFY* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11268599 11271421 - Vvi18g1012 Vvi18g1012 780715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1012 670 PANTHER - 39 203 - -
Vvi18g1012 670 PANTHER - 600 655 - -
Vvi18g1012 670 PANTHER - 307 447 - -
Vvi18g1012 670 PANTHER - 370 598 - -
Vvi18g1012 670 ProSiteProfiles Jacalin-type lectin domain profile. 510 653 IPR001229 -
Vvi18g1012 670 MobiDBLite consensus disorder prediction 268 291 - -
Vvi18g1012 670 ProSiteProfiles Jacalin-type lectin domain profile. 40 182 IPR001229 -
Vvi18g1012 670 PANTHER JACALIN-RELATED LECTIN 3 370 598 - -
Vvi18g1012 670 PANTHER JACALIN-RELATED LECTIN 3 600 655 - -
Vvi18g1012 670 PANTHER JACALIN-RELATED LECTIN 3 307 447 - -
Vvi18g1012 670 PANTHER JACALIN-RELATED LECTIN 3 39 203 - -
Vvi18g1012 670 SUPERFAMILY Mannose-binding lectins 306 446 IPR036404 -
Vvi18g1012 670 SMART Jacalin_2 521 653 IPR001229 -
Vvi18g1012 670 SMART Jacalin_2 51 182 IPR001229 -
Vvi18g1012 670 SMART Jacalin_2 317 448 IPR001229 -
Vvi18g1012 670 MobiDBLite consensus disorder prediction 268 283 - -
Vvi18g1012 670 SUPERFAMILY Mannose-binding lectins 40 182 IPR036404 -
Vvi18g1012 670 CDD Jacalin 51 181 IPR033734 GO:0030246
Vvi18g1012 670 Pfam Jacalin-like lectin domain 319 446 IPR001229 -
Vvi18g1012 670 Pfam Jacalin-like lectin domain 521 652 IPR001229 -
Vvi18g1012 670 Pfam Jacalin-like lectin domain 53 182 IPR001229 -
Vvi18g1012 670 CDD Jacalin 524 652 IPR033734 GO:0030246
Vvi18g1012 670 ProSiteProfiles Jacalin-type lectin domain profile. 306 448 IPR001229 -
Vvi18g1012 670 CDD Jacalin 320 446 IPR033734 GO:0030246
Vvi18g1012 670 SUPERFAMILY Mannose-binding lectins 510 651 IPR036404 -
Vvi18g1012 670 Gene3D - 296 446 IPR036404 -
Vvi18g1012 670 Gene3D - 32 180 IPR036404 -
Vvi18g1012 670 Gene3D - 505 652 IPR036404 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1012 - - - vvi:100255764 1278.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53