Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1013 ATGCTTTTGGCAGGGATTGAACCAAATGGGGTTACAGTTACGAGTGGAATCTCAGCATGTGCATCTCTCAAAGCTCTAAAGAAAGGGATGGAACTCCATTCTGTTGCAGTTAAGATAGGTTGTGTTGAAGATCTATTGGTGGGAAATTCACTAATCGACATGTATTCCAAGTCTGGGGAGCTTGAGGATGCTAGGCGGGTCTTTGATATGATCTTAAAAAAAGATGTTTACACTTGGAATTCAATGATTGGAGGGTACTGCCAAGCTGGCTATTGTGGGAAAGCCTATGATCTCTTTATTAAGATGCATGAATCTGATGTACCACCTAATGTCGTAACGTGGAATGCAATGATCTCAGGCTATATACAGAATGGAGATGAGGATCAAGCTATGGATCTTTTCCATAGGATGGAAAAAGATGGGCTAATTAAGCGGGACACAGCATCATGGAATTCTCTTATTGCAGGTTACCTGCAGAATGGACACAAAAACAAGGCATTGGGGATATTTCGACAAATGCAGTCTTTCTGTATTAGACCCAATTCAGTCACCATGCTGAGTATCTTACCTGCATGTGCTAATTTAGTAGCAGCCAAAAAGGTAAAGGAGATCCATGGTTGTATATTGCGAAGAAATTTAGGGTCTGAACTATCTGTTGCCAATTGTCTCATAGACACTTATGCCAAATCAGGGAATATTGTTTATGCACAAACTATATTTCAAGGCATTTCATCCAAAGATATCATCAGCTGGAACTCGCTAATTGCTGGTTATGTTTTGCATGGTTGTTCAGATTCTGCACTTGATCTCTTTGATCAGATGACAAAGATGGGAGTTAAACCAAGCAGAGGTACTTTTTTGAGTATCATCTATGCATTCAGTCTCTCTGGAATGGTGGACAAGGGGAAGCAAGTTTTCTCTAGCATGATGGAAGACTATCAAATTTTACCAGGTTTGGAACATCATTCAGCTATGATAGATTTATTGGGCCGCTCAGGTAAGCTTGGAGAAGCAATTGAATTCATTGAAGATATGGCCATAGAACCAGACTCCTGCATCTGGGCTGCCTTACTAACTGCCAGTAAAATTCATGGGAATATTGGGCTGGCAATCCGTGCAGGGGAATGTTTGCTAGAATTGGAACCATCGAATTTTTCAATTCACCAGCAAATTTTACAGATGTATGCTTTATCTGGAAAGTTTGAGGATGCACCTGATCAGCACGATCGACTATTCATTGAGGAAGAAGAAAAGGAAGAGATTGGTGGGGTCCACAGTGAAAAACTTGCATTAGCTTTTGCCCTAATTGACCCTTCTTGTGCACCCCGAAGTGTTCGGATTGTGAAGAACCTGAGAATGTGTGGAGATTGCCATGGGACAGCCAAATTTCTCTCCATGTTGTATAGCTGTGAAATATACCTGAGTGATTCAAAGTGCTTGCACTGGTTTAAAAATGGACGTTGTTCTTGTGGCGATTATTGGTAA 1485 41.01 MLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEPSNFSIHQQILQMYALSGKFEDAPDQHDRLFIEEEEKEEIGGVHSEKLALAFALIDPSCAPRSVRIVKNLRMCGDCHGTAKFLSMLYSCEIYLSDSKCLHWFKNGRCSCGDYW* 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11275705 11277358 - Vvi18g1013 Vvi18g1013 780716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1013 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Vvi18g1013 494 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
Vvi18g1013 494 Gene3D Tetratricopeptide repeat domain 197 483 IPR011990 GO:0005515
Vvi18g1013 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 40 - -
Vvi18g1013 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 41 110 - -
Vvi18g1013 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 143 184 - -
Vvi18g1013 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 111 140 - -
Vvi18g1013 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 407 481 - -
Vvi18g1013 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 180 406 - -
Vvi18g1013 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vvi18g1013 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 74 IPR002885 -
Vvi18g1013 494 Pfam DYW family of nucleic acid deaminases 413 494 IPR032867 GO:0008270
Vvi18g1013 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Vvi18g1013 494 PANTHER BNAA06G13890D PROTEIN 1 40 - -
Vvi18g1013 494 PANTHER BNAA06G13890D PROTEIN 407 481 - -
Vvi18g1013 494 PANTHER BNAA06G13890D PROTEIN 180 406 - -
Vvi18g1013 494 PANTHER BNAA06G13890D PROTEIN 41 110 - -
Vvi18g1013 494 PANTHER BNAA06G13890D PROTEIN 143 184 - -
Vvi18g1013 494 PANTHER BNAA06G13890D PROTEIN 111 140 - -
Vvi18g1013 494 Pfam PPR repeat family 246 293 IPR002885 -
Vvi18g1013 494 Pfam PPR repeat family 146 193 IPR002885 -
Vvi18g1013 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Vvi18g1013 494 TIGRFAM PPR: pentatricopeptide repeat domain 77 111 IPR002885 -
Vvi18g1013 494 TIGRFAM PPR: pentatricopeptide repeat domain 49 76 IPR002885 -
Vvi18g1013 494 TIGRFAM PPR: pentatricopeptide repeat domain 112 142 IPR002885 -
Vvi18g1013 494 TIGRFAM PPR: pentatricopeptide repeat domain 149 181 IPR002885 -
Vvi18g1013 494 TIGRFAM PPR: pentatricopeptide repeat domain 249 282 IPR002885 -
Vvi18g1013 494 TIGRFAM PPR: pentatricopeptide repeat domain 285 312 IPR002885 -
Vvi18g1013 494 Pfam PPR repeat 323 345 IPR002885 -
Vvi18g1013 494 Pfam PPR repeat 112 142 IPR002885 -
Vvi18g1013 494 Pfam PPR repeat 77 106 IPR002885 -
Vvi18g1013 494 Pfam PPR repeat 49 75 IPR002885 -
Vvi18g1013 494 SUPERFAMILY TPR-like 55 412 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1013 - - - vvi:100255764 807.364
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1013 . . . . . . . . Cmo05g00276 . . . . . . . . Bhi04g00208 . . . . . . . . . . . . . . . . Cone20ag0115 . . . . . . . . . . . . . . . . Cma05g00271 Car05g00224 . Cpe11g00224 . . . . . . . . . . . . . . . . Csa02g02091 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53