Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1019 ATGGGGAGTTGGTTATGGGCAGTTTCGATTCTCATTCTCGCGGTTCATTCTTCCGTTTCTGAAGCTTCATCCACAGCAGATCTCTTCGAAGCTTGGTGCGAGCAGTATGGCAAGACGTACTCTTCAGAAGAAGAGAAGGCGTCGAGGCTCAAGGTGTTTGAAGAAAATCATGCGTTTGTTACTCAGCACAATAGTATGGCTAATGCTTCCTACACACTAGCTCTCAACGCCTTCGCTGATCTCACGCATCACGAGTTCAAGGCCTCTCGCTTGGGCTTCTCCCCCGGGAGGGCCCAATCGATTCGGTCCGTTGGTACACCGGTTCAAGAGCTCCATGTTCCGCCCGCGGTGGATTGGAGGAAGAGTGGAGCGGTCACAGGTGTGAAAGATCAGGGGAATTGTGGTGGTTGTTGGTCATTCTCAACCACGGGAGCTATTGAAGGCATTAATAAGATTGTAACTGGATCTCTTGTTAGCCTATCTGAACAAGAGTTAGTGGATTGTGACAGATCTTACAATAGTGGCTGTGAGGGTGGACTCATGGACTATGCATATCAGTTTGTTATAAAAAACCAGGGGATTGACAGCGAGGCAGATTACCCATATGTAGGTATGGACAAGCCCTGCAATAAAGAAAAGTTGAAGAAGCATATTGTAACCATTGATGGTTACACAGACATACCCCCAAATGATGAGAAACAGCTACTACAAGTAGTGGCTAAACAACCTGTAAGTGTAGGCATATGTGGCAGTGAGAAAACATTTCAACTCTATTCAAAGGGGGTCTACACTGGGCCATGTTCAAGTACTCTGGATCATGCTGTATTGATTGTGGGTTATGGTACGGAAGATGGTGTTGATTTTTGGATTGTAAAGAATTCATGGGGAGAACATTGGGGAATGCGTGGTTATATTCACATGCTACGTAACAATGGTACAGCAGAAGGCATCTGTGGTATCAACATGTTAGCTTCATATCCAGCCAAGACTAGCCCAAATCCACCTCCACCTCCCACCCCAGGTCCCACTAAATGTGATTTTTTTAGCTCTTGTTCAGAAGGTGAAACCTGCTGTTGTAGCTGGCGTTTTATTGGGGTATGCTTATCATGGAACTGTTGTACGGCGAAATCTGCTGTGTGTTGTGATAACAATAATTACTGCTGCCCTGCTAGTCATCCAATTTGCGATACAAAAAGGAATCGGTGCCTCAAGCCAGCAGGGAATGGCACCGGAGTGGAAGTGCTGAAGAGAAGAGGCTCTTCTGTGAAGTTTGGTGGCTGGAGTTCCATTAATGATGCGTGGAATCTATAA 1311 46.07 MGSWLWAVSILILAVHSSVSEASSTADLFEAWCEQYGKTYSSEEEKASRLKVFEENHAFVTQHNSMANASYTLALNAFADLTHHEFKASRLGFSPGRAQSIRSVGTPVQELHVPPAVDWRKSGAVTGVKDQGNCGGCWSFSTTGAIEGINKIVTGSLVSLSEQELVDCDRSYNSGCEGGLMDYAYQFVIKNQGIDSEADYPYVGMDKPCNKEKLKKHIVTIDGYTDIPPNDEKQLLQVVAKQPVSVGICGSEKTFQLYSKGVYTGPCSSTLDHAVLIVGYGTEDGVDFWIVKNSWGEHWGMRGYIHMLRNNGTAEGICGINMLASYPAKTSPNPPPPPTPGPTKCDFFSSCSEGETCCCSWRFIGVCLSWNCCTAKSAVCCDNNNYCCPASHPICDTKRNRCLKPAGNGTGVEVLKRRGSSVKFGGWSSINDAWNL* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11311312 11316066 - Vvi18g1019 Vvi18g1019 780722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1019 436 PANTHER OS05G0508300 PROTEIN 15 363 - -
Vvi18g1019 436 Pfam Granulin 356 403 IPR000118 -
Vvi18g1019 436 Pfam Papain family cysteine protease 113 327 IPR000668 GO:0006508|GO:0008234
Vvi18g1019 436 CDD Peptidase_C1A 114 327 IPR039417 -
Vvi18g1019 436 PRINTS Papain cysteine protease (C1) family signature 131 146 IPR000668 GO:0006508|GO:0008234
Vvi18g1019 436 PRINTS Papain cysteine protease (C1) family signature 273 283 IPR000668 GO:0006508|GO:0008234
Vvi18g1019 436 PRINTS Papain cysteine protease (C1) family signature 288 294 IPR000668 GO:0006508|GO:0008234
Vvi18g1019 436 Gene3D Cysteine proteinases 10 330 - -
Vvi18g1019 436 SMART Inhibitor_I29_2 29 86 IPR013201 -
Vvi18g1019 436 SUPERFAMILY Granulin repeat 342 374 - -
Vvi18g1019 436 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
Vvi18g1019 436 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 271 281 IPR025660 -
Vvi18g1019 436 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 288 307 IPR025661 -
Vvi18g1019 436 SMART GRAN_2 345 402 IPR000118 -
Vvi18g1019 436 Gene3D Granulin 343 409 IPR037277 -
Vvi18g1019 436 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 15 363 - -
Vvi18g1019 436 SUPERFAMILY Cysteine proteinases 26 327 IPR038765 -
Vvi18g1019 436 SMART pept_c1 113 328 IPR000668 GO:0006508|GO:0008234
Vvi18g1019 436 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 131 142 IPR000169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1019 - - - vvi:100243729 903.664
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g306 Vvi18g1019 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30