Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g102 ATGGGCGGATCTCGAGTTCAGGTCAATAAGGCCCACAAGACTCGATTCTCTTCCAAATCAAGTCGTCAAGTCCACAAAACTTCTCTCCAAGAGAAGAGCAGGATTACAAAGCCGGGAAGCAATGTTGCCAAGGGAGCAAAAGCTGCTCGCCTGCAACGGAACAAGATGATACGGGACCAGAAACGGGCAGCCATTTTGAAAGAGAAAAGGGCTTCAAGTGGATCCACAAGCCCTCCCCGGGTTATTGTTATTTTTGGTCTTTCTGCCTCTGTGAACGTAAATTCAGTGGAGGATGATCTCTTAACATTATTATCTTCAAAGGGAAATGAACCCGTGTTTTCTACGGTTGCTTCTTCCGAGTACAAACTGAGGACAACAGTACTGAAAGCACCTCATGGAGATTTGTCTTCATGCATTGAAATGGTTAAGGTTGCCGATTTGATTGCTTTTGTAGCATCTGCCAGCTGTTCGTGTGAGGAAGGCACTTCCAATTATTATATTGATTCATTTGGCACTCAGTGCCTTTCTGTTTTTAGAGCTCTTGGTTTACCAAGCACTGTAGTGTTGATTCGCGATCTACCTCCTGAGCAGAAACAAAGACATGAGTTGAAGAAAATGTGCAGTTCTTCCCTTTCTTCTGAATTTCCTGAGGATTGTAAATTTTATCCTGCAGATACAAAGGATGAGTTGCATAAGTTCATGTGGCTTTTCAAGGAGCAAAGGCTTTCAGTTCCTCACTGGCGTAATCAACGGTCATACCTTATGGCTCAAAAGGTTGATTTGGTACCCGATGATTGCAACTCAGGAAATTGTACCCTGCTCCTTACTGGTTATCTGCGTGCTCATGGTCTCTCAGTGAATCAGCTGGTCCATATTTCAGGTGCAGGGGATTTTCAGTTGTCCAAAATTGAAATTCTCAAGGATCCATTTCCTTTGAATGCAAGAAAAGGACAGGATCTTATGGATTCAGATGAATTAAATGATGAGCAGGTTATTCGTTCCTTAGCTCCTGATAAATTGAAGCAAGAGCCTTTAATCATTGAAAATGTTCCAGATCCTCTTGCAGGAGAACAGACGTGGCCAACAGAGGCAGAAATGGCTGAGGCTGATAGGAATCAAAAACAAAAAAATCTGAAAAAGAGGATTCTTCCTCGAGGTACTTCAGAATACCAGGCTGCTTGGATTGTGGATGATACAGATGTGGAGGATTCAGATAGGAGTGATGATGATGATGCTGGTGATGGAATGGTGTTAGATGAAAATGAAAGTTGTCTTCCCGGTCATGAGGGAAACAATAATTTTGACCTTGATGATGACCAAGCTTCTCTTTCACTTGACTCCAGGGACAATGATGAACAAACTGATGTTGATTCAGTAATGATGGAAGGTGAGAACTTGACAAGGGAGCAGATCGAGGATGAAATTAAAAAACTTAAAGATGCGCATGCTGAAGATGAGGAGTATCCTGATGAAGTGGATACCCCCTTGGATGTTCCGGCGAGAAAGCGTTTTGCCAAGTATAGAGGCCTCAAGTCCTTTAGAACGTCTTCATGGGACCCTAAAGAATCTCTACCTCCAGAATATGCTAGAATTTTCTCATTTGATAATTTTGCAAGAACACAAAAGCATGTTCTTGCAAAAGCTCTAGATATGGAGCAAGGGTACATGGATGACTGTCTACCAGCTGGCACATACATAAGGCTTCATATCAGGGAGGTACCAGTTAGTGTTGCCTCCAAGTTATGTATGCTTGGGAAGAGAATGCCAGTGATTGCATGTGGCCTTTTGCAACATGAGTGCAAGATGTCAGTCCTTCACTTTAGCATAAAGAAGCATGACGCTTATGATGCTCCTATCAAATCCAAAGAAGAACTAGTATTTCATGTTGGTTTCCGCCAATTTGTCGTTAGGCCAATATTTTCTTCTGATAATATGAATTCAGACAAACACAAAATGGAAAAGTTTCTTCATGCAGGACGTTTCTCCATAGCATCGGTTTATGCCCCGATTTCCTTTACTCCTCTTCCTTTGATAGCCTTGAAGAGTGTGAATGATGTTGCTGCCTCACCTGCTGTTGTTGCATTTGGTTCTTTGAGATGTGTTGACCCAGACAGGATTATTCTGAAGAAAATTATCTTAACTGGTTACCCTCAAAGAGTGTCAAAACTGAAAGCCGCAGTAAGATACATGTTTCACAGCCCAGATGATGTGAGATGGTTCAAACCTGTGGAAGTGTGGACAAAATGTGGTCGCCGGGGTCGTGTCAAGGAGCCCGTTGGTACACATGGGACCATGAAGTGCATTTTCAATGGGGTCCTTCAGCAGCACGACACAGTGTGCATGAGCTTGTACAAACGCACCTATCCCAAGTGGCCCGAACATGGGTTTCCACTTCTTTATGCTTGA 2406 42.98 MGGSRVQVNKAHKTRFSSKSSRQVHKTSLQEKSRITKPGSNVAKGAKAARLQRNKMIRDQKRAAILKEKRASSGSTSPPRVIVIFGLSASVNVNSVEDDLLTLLSSKGNEPVFSTVASSEYKLRTTVLKAPHGDLSSCIEMVKVADLIAFVASASCSCEEGTSNYYIDSFGTQCLSVFRALGLPSTVVLIRDLPPEQKQRHELKKMCSSSLSSEFPEDCKFYPADTKDELHKFMWLFKEQRLSVPHWRNQRSYLMAQKVDLVPDDCNSGNCTLLLTGYLRAHGLSVNQLVHISGAGDFQLSKIEILKDPFPLNARKGQDLMDSDELNDEQVIRSLAPDKLKQEPLIIENVPDPLAGEQTWPTEAEMAEADRNQKQKNLKKRILPRGTSEYQAAWIVDDTDVEDSDRSDDDDAGDGMVLDENESCLPGHEGNNNFDLDDDQASLSLDSRDNDEQTDVDSVMMEGENLTREQIEDEIKKLKDAHAEDEEYPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFSFDNFARTQKHVLAKALDMEQGYMDDCLPAGTYIRLHIREVPVSVASKLCMLGKRMPVIACGLLQHECKMSVLHFSIKKHDAYDAPIKSKEELVFHVGFRQFVVRPIFSSDNMNSDKHKMEKFLHAGRFSIASVYAPISFTPLPLIALKSVNDVAASPAVVAFGSLRCVDPDRIILKKIILTGYPQRVSKLKAAVRYMFHSPDDVRWFKPVEVWTKCGRRGRVKEPVGTHGTMKCIFNGVLQQHDTVCMSLYKRTYPKWPEHGFPLLYA* 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 949014 961356 - Vvi18g102 Vvi18g102 779805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g102 801 MobiDBLite consensus disorder prediction 396 417 - -
Vvi18g102 801 Pfam AARP2CN (NUC121) domain 229 309 IPR012948 GO:0005634|GO:0042254
Vvi18g102 801 PANTHER PRE-RRNA-PROCESSING PROTEIN TSR1 HOMOLOG 2 793 - -
Vvi18g102 801 SMART DUF663_2 491 787 IPR007034 -
Vvi18g102 801 MobiDBLite consensus disorder prediction 441 455 - -
Vvi18g102 801 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 78 243 IPR030387 -
Vvi18g102 801 SMART aarp2cn2 229 310 IPR012948 GO:0005634|GO:0042254
Vvi18g102 801 PANTHER RIBOSOME BIOGENESIS PROTEIN 2 793 IPR039761 GO:0042254
Vvi18g102 801 MobiDBLite consensus disorder prediction 394 455 - -
Vvi18g102 801 MobiDBLite consensus disorder prediction 1 49 - -
Vvi18g102 801 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 492 789 IPR007034 -
Vvi18g102 801 Coils Coil 461 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g102 K14799 TSR1; pre-rRNA-processing protein TSR1 - vvi:100259903 1573.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g102 . Blo12g00859 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007063 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 2 2 1 1 2 1 1 37