Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1023 ATGCTACCTCTTGTTTCTCTACAGTCTTCCAACTTGCATTTCGGCACCGATACGCTCATCTCCTTCTTCTTTCCGGATCGTCTTCTCCCAAAAAGGTTTAATCAACAAAGATGCAGTTTTAGAAGTAGTGGCCAGTACACACTTAAGTGCAGACTTACCAGGGAAAAAGAATCTCCTTCCCTGAGGACCAAGGAATCTCCCTCCCCGGGTCCTTCTTCATTGATAAGGGAACCTCACAAATACTTCGATCAGGTACTTATTACCGTTCGTTCTGGAGATGGAGGCCATGGTGCAATTCTTAGCATGCCTAACCAGAGAGCTCCTTCAAAGCCACAAGGAAAACATGATAAGGATAAGATGAGGAAGAAAAGTTCGTATAAGAGGGATTTTGATGGTTCACTTATCCTTCCTATGGGTGGACATGGAGGGGGTGTGATAATTTATGCAGATGAGGGAGAAGATTCATTACTGGAGTTTCACAAGAAGAGCCGGCACAATGCAAAGCGTGGGGGAAATGTTGATGCCATGGGTGTTTTAACATCCCAATTGCATGATGGACTTGCTGCACCGACACTGCGTATTCCTGTGCCTGTAGGCACAGTTGTAAAGCGTAAGCGAGGGAAGCTTCTGGCAGATCTAGCACAACCAGGCGATGAAATTCTCGTGGCAAGGGGTGGGCAAGGAGGGATTAGCTTGATAGAAATGCCAGAGCATAAAAGGAAAAAATTGATGGCTTTAACCACAAATGTGATGAGAGATGACAATGATAAGGTTTTAGTCCTTGGTCAGCCTGGGGAGGAGGTTAGTTTGGAGTTGATACTACGGGTAGTGGCTGATGTTGGTCTTGTTGGACTTCCAAATGCTGGAAAATCTACCCTATTGGCTGCTATTACACTTGCAAAACCTGATATTGCTGATTATCCTTTCACCACATTAATGCCAAACCTTGGACGCCTTGATGGTGACCCCAGTTTAGGGGCAGGGAAGTATTCATCAGAAGCAACATTAGCAGATCTACCTGGTCTTATTGAAGGTGCTCATCTAGGGAAGGGTTTAGGTCGCAATTTCTTGAGACACTTGAGGAGGACACGGCTTTTGGTCCATGTTGTTGATGCTGCTGCTGAGGACCCTGTGAAGGACTACAGAACTGTCAAAGAAGAACTGCGGATGTACAATCCTAATTACCTTGAACGGCCATACGTTGTGGTGTTAAATAAAATTGACATTCCTAAGGCAATGGATAGACTTCCATCTTTGACTCAAGAAATAATGAAAATTGGAAGTGAGCAGATACCTTCCTCGTCTCAAAACGGCACTGAAGATGCAATTCAGTCATTGCCTTCTGACAGTGAAGGTGCAAATGTTCTTTCTTTGGATTTTCCTGATAAAGATAGGAAGGATAAAGAAATTGAGGACTACCCATGGCCCCTTGCTGTTGTTGGTGTCAGTGTTTTGAAAGGCATAAGGGTAAATGAGATGTTGAAGGAGATAAGGGCAGCTTTAAGGAAGTGCCAAGATGCCAATGGATAA 1530 44.38 MLPLVSLQSSNLHFGTDTLISFFFPDRLLPKRFNQQRCSFRSSGQYTLKCRLTREKESPSLRTKESPSPGPSSLIREPHKYFDQVLITVRSGDGGHGAILSMPNQRAPSKPQGKHDKDKMRKKSSYKRDFDGSLILPMGGHGGGVIIYADEGEDSLLEFHKKSRHNAKRGGNVDAMGVLTSQLHDGLAAPTLRIPVPVGTVVKRKRGKLLADLAQPGDEILVARGGQGGISLIEMPEHKRKKLMALTTNVMRDDNDKVLVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAEDPVKDYRTVKEELRMYNPNYLERPYVVVLNKIDIPKAMDRLPSLTQEIMKIGSEQIPSSSQNGTEDAIQSLPSDSEGANVLSLDFPDKDRKDKEIEDYPWPLAVVGVSVLKGIRVNEMLKEIRAALRKCQDANG* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11338256 11346084 + Vvi18g1023 Vvi18g1023 780726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1023 509 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 55 508 - -
Vvi18g1023 509 Coils Coil 490 509 - -
Vvi18g1023 509 MobiDBLite consensus disorder prediction 429 452 - -
Vvi18g1023 509 CDD Obg 278 416 IPR031167 GO:0005525
Vvi18g1023 509 Gene3D - 278 501 IPR027417 -
Vvi18g1023 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 439 IPR027417 -
Vvi18g1023 509 MobiDBLite consensus disorder prediction 52 76 - -
Vvi18g1023 509 ProSiteProfiles Obg domain profile. 79 277 IPR006169 -
Vvi18g1023 509 MobiDBLite consensus disorder prediction 429 460 - -
Vvi18g1023 509 Pfam 50S ribosome-binding GTPase 279 406 IPR006073 GO:0005525
Vvi18g1023 509 TIGRFAM small_GTP: small GTP-binding protein domain 279 429 IPR005225 GO:0005525
Vvi18g1023 509 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 278 502 IPR031167 GO:0005525
Vvi18g1023 509 Gene3D GTP1/OBG domain 80 276 IPR036726 -
Vvi18g1023 509 ProSitePatterns GTP1/OBG family signature. 338 351 IPR006074 GO:0005525
Vvi18g1023 509 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 55 508 IPR045086 GO:0003924|GO:0005525
Vvi18g1023 509 SUPERFAMILY Obg GTP-binding protein N-terminal domain 81 243 IPR036726 -
Vvi18g1023 509 Pfam GTP1/OBG 139 275 IPR006169 -
Vvi18g1023 509 MobiDBLite consensus disorder prediction 110 126 - -
Vvi18g1023 509 MobiDBLite consensus disorder prediction 96 126 - -
Vvi18g1023 509 PRINTS GTP1/OBG GTP-binding protein family signature 280 300 IPR006073 GO:0005525
Vvi18g1023 509 PRINTS GTP1/OBG GTP-binding protein family signature 301 319 IPR006073 GO:0005525
Vvi18g1023 509 PRINTS GTP1/OBG GTP-binding protein family signature 336 351 IPR006073 GO:0005525
Vvi18g1023 509 PRINTS GTP1/OBG GTP-binding protein family signature 353 371 IPR006073 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1023 - - - vvi:100259096 993.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1023 . . . . . . . . . . . Cma09g00127 . . . Cpe06g00087 . . . . . . . . . . . . . . . Cone4ag1943 Cone7ag1857 . . . Csa03g04248 . . . . . . . Bpe05g00117 . Bma05g00141 . . Cmo09g00124 . . . Car09g00113 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31