Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1027 ATGGATAGAATGGAACCTGCCTTAGATTTACCTCAGAAGGCCTCATTCAATGGGGCTGAGGAAGGCCACAAGCAAAATAAGGAGGAAGTAGGGGTGTCAACAACATTGGTAAGCAATGGTTGCGTCGATATACGAGGGAGAATTGCGGACAAGCAAAGAACTGGGGGATGGAAGGCATCACCCTTTATCATAGTGAATGAGGTGGCAGAGAGGCTAGCGTTTTTCGCAATTGCTGTGAATATGGTGCAGTACTTGGTACTTCAGATGAACCAGTCGCTTCCAAAAGCTGCCACGCACGTGACTGATTGGATTGGAGCTGCCTATGTTCTCACAATCCTTGGTGCATTCCTAGCTGATGCTTATTTGGGCCGATTCAGAACCATCATCATCTTCTCCTCTGTTTACACAGTTGGAATGGTGTTGTTGACACTCTCTGCTTCCATAGACAGCCTACGTCCACCTCAATGCCCCACACGACCTTGCGAACCAGCATCCCGCGGCCAGACGACATTCCTTTATGGCGCACTAGCTCTTATAGCCCTCGGAACAGGAGGTATCAAGCCATGCGTCTCGTCCTTTGGTGCTGATCAATTCGACGAAGCAGATGGAGAGGAAGTGCAGAAGAAATACTCATTCTTCAATTGGTTCTTCTTTGCCATCAACATGGGGGCGCTCCTTGGTATCACCATATTGGTGTATATACAAGTAGAGAAAGGCTGGAATTGGGGTTTTGGAATCCCCACGGCAGCGATGTTCTGTTCCATCATCATCTTAGCTGCTGGCATTCCATACTATCGTTTCCAGAAACCAATGGGTAGTGCTTTTACCAGGTTTCTTCAGGTTATTGTGGCTTCAGTGAGGAACCATTTTAAAGGGGTAGAAGCGGGACATGGTGCTGAACTCTATGAAGTCAAAACTACAGAGTCAGACATCTTGGGAAATCGAAAGATCGCTCACACCGTCCAGTACAGGTTTTTGGACAAAGCAGCAGTTATAACAGATGCTGAAGCCAACACAAAGAGCCGCTGGAGGCTCTGCACAGTCACCCAAGTTGAAGAATTCAAATCCTTCGTTAGAATCCTACCAGTGTGGGCCTCCACCATAGCTCTCTCCATTTCGTTCGCCCAACTCTCAACCTTCTTCATCAGCCAAGCCCATATCATGGACAGAAAACTTGGCCCTGACTTCGTCATCCCAGCCGGCTCCATTCCCGTCTTTAGCGCCATGAACGCACTCATCCTTGTTCCCATCTACGAGAAGTGGATTGTTCCCATTCTCCGCCGCCACACTGGGCACCGCAGAGGCATCACATCTCTGCAACGAATGGGCATCGGCCTATTCGTTTCCATCTTTGCCCTGGCATCTGCCGCCTTGGTAGAAAAGAGACGGCGTGACCATTCTAGGGCATCAACCATGAGCGTTTTCTGGCTGCTTCCCCAGTTCTTCCTCATAGGCAGCGCCGAGGTCTTCACGTATGTGGGGCAACTTGAGTTCTTCTACGACGAAGCCACCGATGGGACTCGAAGCCTTAGCAGCGCAATGTTTCTGAGTGAGATTGGGATAGGAAGCTGGTTGAGCACTGCCATCGTTAAGATCATCGAAGGCACAACTGGTGGGGAAGAAAAAGGGTGGTTGAGGAATACTCTTAACACAAGCCGACTGGATTACTTCTACTGGGTATTGACTGGAATCAATGTTGCTAATTTCTTCATATATTTGTGGATTGCTGGGCTTTATAAGGAGAAAGGCGGTGCAAGTGGGAGTGTAAGAGATGAGCCCATGGCAGAGCTGGGCGGTGAAGAAGAAAGCCTTCGGACAACCTTGGTCAGCAATGGTCGTGTCGACTTTAGGGGGAGAATTGCAGATAAGCGAACAACCGGCGGATGGAAGGCGTCCCCGTTCATCATAGCGAATGAGGTGGCGGAGAGGTTAGCCTTTTTCGCAATTGCGGTGAACATGGTGTCTTACTTGGTATTTGAGATGCACCAGTCGATTCCGAAAGCTGCTACTCACGTGACTGACTGGATTGGAGCTGCCTATGTTCTCACAATCCTTGGCGCTTTCTTGGCCGATGCTTGTTTGGGCCGATTCGGAACCATCGTCATCTTCTCTTCCATTTATGCTGTTGGAATGGTGTTGTTAACACTCTCAGCCTCCATAGACAGCCTACATCCATCTCCATGCACCAAGCAACCATGCAAACCGGCATCCTATGGCCAAACAGTCTTTTTCAGTTGCGCCTTAGCCCTCATAGCCCTTGGGACCGGTGGTATCAAGCCATGCGTCTCCTCTTTCGGGGCTGATCAATTTGACGAGGCAGATGAAAATGAAGTCCACAAGAAATATGCATTCTTCAATTGGTTCTTCTTCGCCATCAACATTGGTGCACTCTTCGGTATCACTCTCTTGGTCTACATTCAAGTGGAGAAAAGCTGGAGTTGGGGTTTCGGAGTTCCAACGGCTACCATGTTTTGTTCCATCATAATCTTGGTCGCTGGTATGAGGTATTATCGTTACCAAAGGCCGATGGGAAGTGCCTTTACAAGGTTCCTTCAGGTCATTGTGGCTTCAGTCAGGAACCACTCTAGAGGGGTTGAAGTGGGACGTGAAGATGATCTATATGAAGTCAGCACTAAAGAGTCAGATATCTTCGGCGCCGTAAAGCTCCCTCATACCGCACAATACAGCTTTTTGGACAAAGCAGCAGTTATAACAGACGCTGAAGCCATCACAAAGAACCGTTGGAGGCTATGCACAGTCACCCAAGTTGAAGAATTCAAATCCTTCCTCAGAGTCCTACCAGTCTGGGCCTCCACCATAGCTCTCTCCATTTCATTCGCCCAACTCTCCACCTTCTTCATCAGCCAGGCCCTCATCATGGACAGAAAACTTGGCCCCAGTTTCGTCATTCCAGCTGGTTCCATTCCCGTGTTTAGCGCCATTACTGGCCTCATCCTTGTCCCCATCTACGAAAAATGGATCGTTCCCATTCTCCGCCGCTATACTGGGCACCGTAGAGGCATCACATCACTACAACGAATGGGCGTCGGCCTATTCTTGTCCATAATTGCTCTGGCCTCTGCTGCCTTGGTAGAAAAGAAACGGCGTGACCATTCTAAACCATTAACGGTGAGCGTGTTCTGGCTGCTTCCGCAGTACTTCCTCATGGGGAGCGCTGAAGTTTTTACGTACGTCGGACAACTTGAGTTCTTCTACGATGAAGCCACCGACGGGACTCGAAGCATTAGCAGCGCAATTTTTCTGAGTGAGATTGGGATAGGAAGCTGGTTGAGCAGTGCCATCGTTGAGATCATCGAAGGCACAACTGGCGGGGAAGAAAAAGGGTGGCTGAGGAATGATATTAACAAAAGCCGGCTGGACTATTTCTACTGGACACTGGCGGGGATCAATGGTGTTAATTTCTTGATATATTTATGGATTGCTCGGCGTTATAAGGGCAAAGGTAGTGAAAAGTGGAGTGTGAGAGATGTAGCCGTTCATGCCACTAAACATTTATATATACCATTTATCTATTTGGTAGAAATTTATTACTTAATTTATTCCTATACAACTCATTTCCGCTTTGGACGGCTTTAA 3597 48.46 MDRMEPALDLPQKASFNGAEEGHKQNKEEVGVSTTLVSNGCVDIRGRIADKQRTGGWKASPFIIVNEVAERLAFFAIAVNMVQYLVLQMNQSLPKAATHVTDWIGAAYVLTILGAFLADAYLGRFRTIIIFSSVYTVGMVLLTLSASIDSLRPPQCPTRPCEPASRGQTTFLYGALALIALGTGGIKPCVSSFGADQFDEADGEEVQKKYSFFNWFFFAINMGALLGITILVYIQVEKGWNWGFGIPTAAMFCSIIILAAGIPYYRFQKPMGSAFTRFLQVIVASVRNHFKGVEAGHGAELYEVKTTESDILGNRKIAHTVQYRFLDKAAVITDAEANTKSRWRLCTVTQVEEFKSFVRILPVWASTIALSISFAQLSTFFISQAHIMDRKLGPDFVIPAGSIPVFSAMNALILVPIYEKWIVPILRRHTGHRRGITSLQRMGIGLFVSIFALASAALVEKRRRDHSRASTMSVFWLLPQFFLIGSAEVFTYVGQLEFFYDEATDGTRSLSSAMFLSEIGIGSWLSTAIVKIIEGTTGGEEKGWLRNTLNTSRLDYFYWVLTGINVANFFIYLWIAGLYKEKGGASGSVRDEPMAELGGEEESLRTTLVSNGRVDFRGRIADKRTTGGWKASPFIIANEVAERLAFFAIAVNMVSYLVFEMHQSIPKAATHVTDWIGAAYVLTILGAFLADACLGRFGTIVIFSSIYAVGMVLLTLSASIDSLHPSPCTKQPCKPASYGQTVFFSCALALIALGTGGIKPCVSSFGADQFDEADENEVHKKYAFFNWFFFAINIGALFGITLLVYIQVEKSWSWGFGVPTATMFCSIIILVAGMRYYRYQRPMGSAFTRFLQVIVASVRNHSRGVEVGREDDLYEVSTKESDIFGAVKLPHTAQYSFLDKAAVITDAEAITKNRWRLCTVTQVEEFKSFLRVLPVWASTIALSISFAQLSTFFISQALIMDRKLGPSFVIPAGSIPVFSAITGLILVPIYEKWIVPILRRYTGHRRGITSLQRMGVGLFLSIIALASAALVEKKRRDHSKPLTVSVFWLLPQYFLMGSAEVFTYVGQLEFFYDEATDGTRSISSAIFLSEIGIGSWLSSAIVEIIEGTTGGEEKGWLRNDINKSRLDYFYWTLAGINGVNFLIYLWIARRYKGKGSEKWSVRDVAVHATKHLYIPFIYLVEIYYLIYSYTTHFRFGRL* 1199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11374220 11381696 + Vvi18g1027 Vvi18g1027 780730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1027 1198 Gene3D MFS general substrate transporter like domains 31 585 IPR036259 -
Vvi18g1027 1198 Gene3D MFS general substrate transporter like domains 602 1159 IPR036259 -
Vvi18g1027 1198 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 114 138 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1027 1198 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 28 592 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1027 1198 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 604 1165 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1027 1198 SUPERFAMILY MFS general substrate transporter 624 1155 IPR036259 -
Vvi18g1027 1198 Pfam POT family 125 544 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1027 1198 Pfam POT family 698 1116 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1027 1198 CDD MFS_NPF 61 576 - -
Vvi18g1027 1198 CDD MFS_NPF 633 1150 - -
Vvi18g1027 1198 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 2. 785 797 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1027 1198 PANTHER PEPTIDE TRANSPORTER 28 592 - -
Vvi18g1027 1198 PANTHER PEPTIDE TRANSPORTER 604 1165 - -
Vvi18g1027 1198 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 2. 213 225 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1027 1198 SUPERFAMILY MFS general substrate transporter 54 576 IPR036259 -
Vvi18g1027 1198 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1027 K14638 SLC15A3_4, PHT; solute carrier family 15 (peptide/histidine transporter), member 3/4 - vvi:100262501 1175.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000398 1 3 2 2 2 3 0 1 3 5 3 2 3 8 7 5 2 4 1 3 6 7 6 7 7 3 2 4 8 11 121