Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1029 ATGGAGGAAGAGCAGGGTAACAGTAGCAGTAGCAACTTGGAGACGGGAAAGGCGGAGAGATCGGTGTGGCTGATGAAGTGCCCCTTGGCGGTGTCCAAATCATGGCAATCCCATTCTTCCTCTGAATCACAACCTGTCGCCAAGGTCGTCCTCTCCCTCGATCCTCTCCGCTCCGAAGATCCCTCTGCGCTGGAGTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTCACAATGAAAATATTGAGGAGTATGGCAAATTGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTTGGTCTGATTGCATCCAATTCTAAGGATAAGAAGAAAACTGCGCCAGTTAAGGGCTCTGACATGAAAAGAACTAGAAGGGATCGTGGGGAACTGGAAGATATTATGTTCAAGCTTTTTGAAAGGCAACCTAACTGGGCCTTAAAGCAGCTAGTCCAAGAGACAGATCAACCTGCGCAATTTTTGAAAGAGATACTGAACGAGCTCTGCGTGTACAATAAAAGAGGAACCAATCAAGGAACTTATGAGCTTAAGCCAGAATATAAGAAATCTGCTGAGGATACAGGTGCTGAATAA 780 43.97 MEEEQGNSSSSNLETGKAERSVWLMKCPLAVSKSWQSHSSSESQPVAKVVLSLDPLRSEDPSALEFTMEMTGTGAPNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKFDMKPHNENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSKDKKKTAPVKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGAE* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11397779 11406230 - Vvi18g1029 Vvi18g1029 780732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1029 259 Pfam TFIIF, beta subunit HTH domain 187 250 IPR040450 -
Vvi18g1029 259 Gene3D - 185 252 IPR036388 -
Vvi18g1029 259 Pfam TFIIF, beta subunit N-terminus 19 133 IPR040504 -
Vvi18g1029 259 SUPERFAMILY Winged helix DNA-binding domain 185 251 IPR036390 -
Vvi18g1029 259 SUPERFAMILY Rap30/74 interaction domains 10 119 IPR011039 GO:0006367
Vvi18g1029 259 PANTHER OS01G0772200 PROTEIN 10 258 - -
Vvi18g1029 259 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 10 258 IPR003196 GO:0005674|GO:0006366|GO:0006367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1029 K03139 TFIIF2, GTF2F2, TFG2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] - vvi:100267659 516.153
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1029 . . . . . . . . . Cmo12g00385 . . . Car12g00411 . . Cpe07g00389 Bhi04g00216 . . . Hepe10g0596 . . Cla08g01450 Cam08g1935 Cec08g1509 Cco08g1648 Clacu08g1625 . Cre08g1411 . . Cone17ag1373 Cone20ag0109 . . . Cme03g01911 Blo17g00767 . Bda08g01249 . . Bpe05g00121 . Bma05g00146 . . . Cma12g00434 . . . . . . . . . . . . . . . . . . . Lsi08g01354 Csa02g02100 Chy03g01415 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008633 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35