Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g103 | ATGCTTCTTCTGCCGGCGCCGCTTCCGACTCGATTCCCTTCGTATCATTTCTTATCTCCGGTTCTCCGCGACCACCGCATTCTCCAGCCACCACTCCTCGCCACCACCTCTGCTGCCGTCACCACCGCTTCTGGAGAAGCCTCTCAGTTCTCCAAGCCACTCAACGAATACGGCAGCAGCGGCGACCTTAATTCTGTGCCGAACCGCCGCTACGACTTCACTCCACTGCTCCGGTTTCTGTCCAATTCAGAATCCGACTCTGATTCCGGAGCCGAAGTCGAGTCTCCTCCTCCGACCTCTCTGGACTTCACTGAGTTCCAGCTAGTGGAGTCTTACCGAGCCGTGCCGGCTCCGCTGTGGCACTCGCTCCTTAAATCGCTATGCTCAGATTCGTCCTCAATTGGAACTGCGTATTCCCTAGTTACATGGCTTGAGAGGCACAATCTCTGTTTTTCTTACGAGTTGCTCTACTCGATTCTTATTCACGCTCTGGGACGCTCCGAGAAGCTTTACGAAGCGTTCTTGCTTTCTCAGAGACAAACCCTAACTCCATTGACATACAATGCCCTAATTGGGGCCTGTGCTCGTAACGATGACCTCGAAAAAGCCCTAAATTTGATGTCTCGGATGCGCCGTGATGGTTTCCCATCCGATTTCGTGAATTACAGCTTCATAATTCAGTCGCTGACTCGTACTAACAAGAGTGATTCTTCAATGTTGCAGAAAATTTATGCGGAGATTGAGTCAGATAAGATTGAGCTTGATGGACAGCTCTTGAATGATATAATCGTGGGGTTTGCGAAATCTGGTGATGTGAACCGGGCAATGTCCTTTCTGGCCATGGTACAGGGCAATGGGTTGAGCCCAAAAACTGCTACTCTTGTTGCAGTTATAACTGCATTGGGGAATGCTGGTAGGACAGAGGAGGCGGAGGCTATTTTTGAGGAGTTAAAAGAAGGTGGATTGATGCCAAGGACAAGGGCTTATAATGCTCTTCTCAAAGGGTACGTGAAAACAGGTTCTTTGAAAGATGCTGAATCCATTGTGTCGGAGATGGAGAGGAGTGGGTTTTCCCCAGATGAGCACACTTATAGTCTTCTTATTGATGCATATGCAAATGCAGGTAGGTGGGAAAGCGCAAGAATTGTGTTGAAGGAAATGGAAGCAAGTGGTGTACGGCCTAATTCTTATGTTTTTAGCAGAATTTTAGCAAGTTATCGTGATAGAGGAAAATGGCAAAAATCATTTCAGGTTCTGAGGGAGATGAGGAATAGCGGGGTGTCCCCTGATAGGCATTTTTACAATGTGATGATTGATACTTTTGGCAAGTGTAATTGTCTAGATCACGCACTGGCCACATTTGACCGGATGAGAATGGAGGGTGTACAGCCTGATGCTGTCACATGGAATACGCTCATAGATTGTCACTGTAAGTCTGGGCACCACAATAAAGCAGAGGAGTTGTTTGAGGCAATGCAGGAAAGTGGGTGCTCTCCTTGCACTACAACATATAATATTATGATTAATTCTTTTGGGGAGCAGGAGAGATGGGAGGATGTGAAGACCTTGTTGGGGAAGATGCAGAGTCAGGGGTTGTTGGCCAATGTTGTTACATACACCACACTGGTTGATATTTATGGACAATCAGGGAGATTTAAGGATGCAATAGAGTGCTTGGAGGTCATGAAATCTGTTGGGTTGAAGCCATCCTCAACCATGTATAATGCACTAATTAATGCATATGCACAAAGGGGTTTGTCTGAGCAAGCAATAAATGCATTTAGGGTCATGAGAGCAGATGGTCTAAAGCCCAGTGTGTTGGTTCTCAACTCCTTAATCAATGCATTTGGTGAGGATAGAAGGGATGCTGAAGCTTTTTCTGTGTTGCAGTACATGAAGGAAAATGACTTGAAGCCAGATGTTGTTACATATACTACACTCATGAAAGCTCTAATTCGGGTTGAGAAGTTTGACAAGGTTCCAGCTGTGTATGAAGAAATGACTCTATCTGGGTGTACTCCAGATAGGAAAGCCAGAGCAATGTTGCGGTCTGCTCTCAGATACATGGAGCGAACACTAAAATCATAG | 2088 | 46.31 | MLLLPAPLPTRFPSYHFLSPVLRDHRILQPPLLATTSAAVTTASGEASQFSKPLNEYGSSGDLNSVPNRRYDFTPLLRFLSNSESDSDSGAEVESPPPTSLDFTEFQLVESYRAVPAPLWHSLLKSLCSDSSSIGTAYSLVTWLERHNLCFSYELLYSILIHALGRSEKLYEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSALRYMERTLKS* | 696 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 961810 | 966293 | + | Vvi18g103 | Vvi18g103 | 779806 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g103 | 695 | SUPERFAMILY | TPR-like | 461 | 596 | IPR011990 | GO:0005515 | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 290 | 324 | IPR002885 | - | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 183 | 217 | IPR002885 | - | |
| Vvi18g103 | 695 | Gene3D | Tetratricopeptide repeat domain | 528 | 596 | IPR011990 | GO:0005515 | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 535 | 569 | IPR002885 | - | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 360 | 394 | IPR002885 | - | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 430 | 464 | IPR002885 | - | |
| Vvi18g103 | 695 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN CRP1 HOMOLOG, CHLOROPLASTIC | 98 | 694 | - | - | |
| Vvi18g103 | 695 | Pfam | PPR repeat family | 464 | 511 | IPR002885 | - | |
| Vvi18g103 | 695 | Pfam | PPR repeat family | 604 | 652 | IPR002885 | - | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 605 | 639 | IPR002885 | - | |
| Vvi18g103 | 695 | Gene3D | Tetratricopeptide repeat domain | 408 | 527 | IPR011990 | GO:0005515 | |
| Vvi18g103 | 695 | Gene3D | Tetratricopeptide repeat domain | 597 | 694 | IPR011990 | GO:0005515 | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 255 | 289 | IPR002885 | - | |
| Vvi18g103 | 695 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 98 | 694 | - | - | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 570 | 604 | IPR002885 | - | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 640 | 674 | IPR002885 | - | |
| Vvi18g103 | 695 | Pfam | Pentacotripeptide-repeat region of PRORP | 187 | 376 | IPR033443 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 296 | 324 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 398 | 430 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 467 | 499 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 573 | 606 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 434 | 466 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 610 | 641 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 186 | 218 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 362 | 395 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 642 | 675 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 503 | 535 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 328 | 361 | IPR002885 | - | |
| Vvi18g103 | 695 | TIGRFAM | PPR: pentatricopeptide repeat domain | 537 | 570 | IPR002885 | - | |
| Vvi18g103 | 695 | Gene3D | Tetratricopeptide repeat domain | 121 | 283 | IPR011990 | GO:0005515 | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 395 | 429 | IPR002885 | - | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 465 | 499 | IPR002885 | - | |
| Vvi18g103 | 695 | Pfam | Pentatricopeptide repeat domain | 383 | 443 | IPR002885 | - | |
| Vvi18g103 | 695 | Pfam | Pentatricopeptide repeat domain | 523 | 583 | IPR002885 | - | |
| Vvi18g103 | 695 | Gene3D | Tetratricopeptide repeat domain | 294 | 407 | IPR011990 | GO:0005515 | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | IPR002885 | - | |
| Vvi18g103 | 695 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 500 | 534 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g103 | - | - | - | vvi:100263329 | 1353.58 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g103 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone20ag0029 | . | . | . | . | . | . | Bda08g01169 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009283 | 1 | 3 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 33 |