Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1030 ATGGATTGTCTCCTTCGCTCCGTTCTCCTGCTTTTTGTGCCTTTTCTTTTGTTCTTTGGGGCCATGTCTGATGTATCTTCTAATGAATTGGATGATCTTCTGATTCGCCAAGTCGTGTCGAACAGTGATGATCTCTTGAGCGCCGAACACCATTTCGCCGCATTCAAGGCCAGGTTCCGGAAAACGTACGCCACGGCGGAGGAGCACGACTACCGGTTTAGCATCTTCAAGGCTAATTTACGGCGTGCTAAACGAAACCAGTTGCTTGATCCTTCCGCCGTGCACGGTGTCACTCGATTTTCTGATTTAACTCCGGCGGAGTTTCGGCAAAACTATCTCGGATTAAAGCCTCTTCGGTTCCCAATCGATACACAACAGGCTCCAATACTTCCGACGAATGATCTCCCTACAGATTTCGATTGGAGAGATCATGGCGCGGTAACAGCTGTTAAAGATCAAGGTGAATGCGGATCATGCTGGTCATTCAGCACAACTGGAGCCTTGGAAGGAGCTCATTTTCTCGCCACTGGAAATCTTGTTAGCCTGAGCGAACAGCAACTTGTGGATTGTGACCACGAGTGTGATCCAGAAGAATATGGTGCTTGTGACAGGGGCTGCAATGGTGGGTTGATGAACACTGCCTTTGAATACATACTGAAGGCTGGGGGAGTTGTGCGAGGGGAGGATTATCCTTACACTGGGACTGATGGTCATTGCAAGTTTGACAAAACAAAAATTGCTGCATCTGTATCTAACTTCAGTACTGTTTCTATTGATGAAGATCAAATTGCTGCGAATTTGGTGAAGAATGGCCCTCTTGCAGTGGGCATCAATGCGATTTTCATGCAATCATACGCGGGTGGAGTTTCATGCCCATTCATTTGCTCAACCAGTTTGAATCATGGGGTACTTCTAGTTGGATATGGGTCTGCTGGTTATTCCCCCATCCGATTCAAGGAAAAGCCTTATTGGCTCTTGAAGAACTCCTGGGGTCAAAATTGGGGAGAGCATGGGTATTACAAGATTTGCAGGGGTCATAATATATGTGGAGTGGATTCCATGGTCTCAACGGTTGCAGCTATCCAATCCGCTACTTAG 1098 47.09 MDCLLRSVLLLFVPFLLFFGAMSDVSSNELDDLLIRQVVSNSDDLLSAEHHFAAFKARFRKTYATAEEHDYRFSIFKANLRRAKRNQLLDPSAVHGVTRFSDLTPAEFRQNYLGLKPLRFPIDTQQAPILPTNDLPTDFDWRDHGAVTAVKDQGECGSCWSFSTTGALEGAHFLATGNLVSLSEQQLVDCDHECDPEEYGACDRGCNGGLMNTAFEYILKAGGVVRGEDYPYTGTDGHCKFDKTKIAASVSNFSTVSIDEDQIAANLVKNGPLAVGINAIFMQSYAGGVSCPFICSTSLNHGVLLVGYGSAGYSPIRFKEKPYWLLKNSWGQNWGEHGYYKICRGHNICGVDSMVSTVAAIQSAT* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11409761 11411664 + Vvi18g1030 Vvi18g1030 780733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1030 365 Gene3D Cysteine proteinases 25 359 - -
Vvi18g1030 365 SMART Inhibitor_I29_2 52 108 IPR013201 -
Vvi18g1030 365 SMART pept_c1 135 359 IPR000668 GO:0006508|GO:0008234
Vvi18g1030 365 PANTHER CYSTEINE PROTEASE RD19C-RELATED 29 360 - -
Vvi18g1030 365 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 29 360 - -
Vvi18g1030 365 CDD Peptidase_C1A 136 358 IPR039417 -
Vvi18g1030 365 Pfam Papain family cysteine protease 135 357 IPR000668 GO:0006508|GO:0008234
Vvi18g1030 365 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Vvi18g1030 365 SUPERFAMILY Cysteine proteinases 48 357 IPR038765 -
Vvi18g1030 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 323 342 IPR025661 -
Vvi18g1030 365 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Vvi18g1030 365 PRINTS Papain cysteine protease (C1) family signature 301 311 IPR000668 GO:0006508|GO:0008234
Vvi18g1030 365 PRINTS Papain cysteine protease (C1) family signature 323 329 IPR000668 GO:0006508|GO:0008234
Vvi18g1030 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 299 309 IPR025660 -
Vvi18g1030 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1030 K01373 CTSF; cathepsin F [EC:3.4.22.41] - vvi:100245344 742.651
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1030 . . . . . . . . . . . . . . . . . Bhi04g00217 . . . Hepe10g0121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00383 Cam11g0429 Cec11g0423 Cco11g0417 Clacu11g0551 Cmu11g0408 Cre11g0894 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102