Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1031 ATGGATTTTCTCTCCAACTTCGTTCTCCTCCTTCTTGTACCTTCTTTGTTGGTTTTGAAGGCTGTTTCTGAGGCATCTTTCGATGAATCCGACAACCTCATGATACGCCAAGTTGAGTCACATGTTGATGATTTCTTGAATGCTGAACGCCATTTTGAGAAATTTAAGGCCAGGTTCCAAAAAACCTACGCCACCCCAGAGGAGCACGACTACCGCTTTAACGTTTTCAAAGCTAACTTACGCCGTGCTAAACGACACCAGTTACTTGATCCTTCCGCTGTACATGGCGTCACTCAATTCTCTGATTTAACTCCTGCGGAGTTTCGTCGTGATTATCTTGGATTGAATCCTCTTCGGTTCCCGGCCGATGCACAACAGGCTCCAATCCTCCCAACGGACAACCTCCCTACTGATTTCGATTGGAGAGAGAATGGGGCCGTGACACCGGTTAAGAATCAAGGTAATTGTGGATCATGCTGGTCGTTTAGTACAATTGGAGCCTTGGAGGGAGCTCATTTTCTTGCGACGGGAAATCTTGAGAGTCTGAGTGAGCAACAGCTTGTGGATTGTGACCGTGAGTGTGATCCAGAAGAATATGATGCATGTGATGATGGGTGCAACGGTGGACTAATGAACAATGCCTTTGAGTACATACTGAAGACTGGGGGAGTTGAGAGAGAGAAGGACTACCCTTACACTGGGAGGGATCGCAGTCCTTGCAAATTTAACGAGAGCAAAATCGTTGCATCTGTATCTAACTTTAGTGTCGTGTCTATCGACGAAGATCAAATCGCTGCCAATCTGGTGAAAAATGGCCCTCTTGCAGTGGGTATCAATGCAGTTTTCATGCAAACATACACGGCTGGAGTTTCATGCCCTTTCCTTTGCTCAGGGGAGTTAGATCATGGGGTGCTTCTGGTTGGATATGGTTCTGCTGGTTATTCCCCTATCCGGTTCAAAGAAAAACCTTATTGGATCCTAAAGAACTCCTGGAGTAAATACTGGGGAGAGCATGGTTATTACAGGATCTGTAGGGGTCAAAATATGTGTGGAGTGGATTCCATGGTCTCATCTGTAGTAGCAGCTATCCAAACCACTAGCCAATAA 1107 45.98 MDFLSNFVLLLLVPSLLVLKAVSEASFDESDNLMIRQVESHVDDFLNAERHFEKFKARFQKTYATPEEHDYRFNVFKANLRRAKRHQLLDPSAVHGVTQFSDLTPAEFRRDYLGLNPLRFPADAQQAPILPTDNLPTDFDWRENGAVTPVKNQGNCGSCWSFSTIGALEGAHFLATGNLESLSEQQLVDCDRECDPEEYDACDDGCNGGLMNNAFEYILKTGGVEREKDYPYTGRDRSPCKFNESKIVASVSNFSVVSIDEDQIAANLVKNGPLAVGINAVFMQTYTAGVSCPFLCSGELDHGVLLVGYGSAGYSPIRFKEKPYWILKNSWSKYWGEHGYYRICRGQNMCGVDSMVSSVVAAIQTTSQ* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11419070 11420594 + Vvi18g1031 Vvi18g1031 780734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1031 368 SUPERFAMILY Cysteine proteinases 49 359 IPR038765 -
Vvi18g1031 368 CDD Peptidase_C1A 136 359 IPR039417 -
Vvi18g1031 368 PANTHER CYSTEINE PROTEASE RD19C-RELATED 25 361 - -
Vvi18g1031 368 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Vvi18g1031 368 Gene3D Cysteine proteinases 24 360 - -
Vvi18g1031 368 SMART Inhibitor_I29_2 52 108 IPR013201 -
Vvi18g1031 368 Pfam Papain family cysteine protease 135 358 IPR000668 GO:0006508|GO:0008234
Vvi18g1031 368 SMART pept_c1 135 360 IPR000668 GO:0006508|GO:0008234
Vvi18g1031 368 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Vvi18g1031 368 PRINTS Papain cysteine protease (C1) family signature 302 312 IPR000668 GO:0006508|GO:0008234
Vvi18g1031 368 PRINTS Papain cysteine protease (C1) family signature 324 330 IPR000668 GO:0006508|GO:0008234
Vvi18g1031 368 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 361 - -
Vvi18g1031 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 300 310 IPR025660 -
Vvi18g1031 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Vvi18g1031 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1031 K01373 CTSF; cathepsin F [EC:3.4.22.41] - vvi:100248853 753.821
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102