Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1032 ATGGATCGTCTCTCTTGCTTTTGTCTCTTCCTTTTCCTTTCTTCTTTGCTGTTCTCTGCGGCTGTGTCCGTGTCTGTGTCTGATGTATCTTTCGATGAATCCGAGGATTTGTTGATCCATCAAGTTGTGTCGGATGGTGATGATCTCTTGAATGCGGAATACCAGTTTGCTGAATTCAAGACAAAGTTCGGCAAAACCTACGCCACTGCAGAAGAGCACGACCATCGCTTTAATGTTTTCAAGGCTAATTTACGCCGTGCTAAACGACACCAGTTACTTGATCCTTCAGCTGAACATGGCGTCACTCAGTTCTCTGATTTAACTCCAAGGGAGTTTCGCCAGAACTATCTTGGATTAAAGCGTCTCCAGCTCCCTGCCGACGCACAAAAGGCTCCAATCCTCCCAACGAAGGATCTCCCTACTGATTTCGATTGGAGGGATCATGGTGCCGTAACGGCAGTTAAAGATCAAGGTTATTGTGGATCATGCTGGTCGTTCAGCACAATTGGAGCCTTGGAAGGAGCACATTTTCTTGCAACTGGAAATCTTGTTAGTTTGAGTACGCAACAACTTCTGGATTGTGACACTGAGTGTGATCCAGAAGAATATGATGCTTGTGATGATGGATGCAACGGTGGGCTAATGAACAATGCATTTGAGTACATACTAAAGGCTGGGGGTGTTGCGCAGGAGGAGGACTACCCTTATACTGGAACCGATCGTGGTCTTTGCAGATTTAACAAAACTAAAATCGCTGCATCTGTTGCTAACTTCAGTGTTGTTTCCCTTGACGAAGATCAAATTGCTGCAAATTTGGTGAAGAATGGCCCTCTTGCAGTGGGTATCAATGCAGTCTTCATGCAAACATACAAGAGCGGAGTTTCATGCCCATACATTTGCTCAAGCACTTTGGATCATGGGGTTCTTTTGGTTGGATATGGTTCTGCTGGTTACTCTCCTATTCGGTTCAAGGAAAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAAAGTTGGGGAGAACAAGGGTATTACAAAATTTGCAGGGGCCATAATATATGTGGAGTAGATTCCATGGTCTCAACTGTTGCAGCTATTCACACCACCGCTTTGTAG 1116 45.07 MDRLSCFCLFLFLSSLLFSAAVSVSVSDVSFDESEDLLIHQVVSDGDDLLNAEYQFAEFKTKFGKTYATAEEHDHRFNVFKANLRRAKRHQLLDPSAEHGVTQFSDLTPREFRQNYLGLKRLQLPADAQKAPILPTKDLPTDFDWRDHGAVTAVKDQGYCGSCWSFSTIGALEGAHFLATGNLVSLSTQQLLDCDTECDPEEYDACDDGCNGGLMNNAFEYILKAGGVAQEEDYPYTGTDRGLCRFNKTKIAASVANFSVVSLDEDQIAANLVKNGPLAVGINAVFMQTYKSGVSCPYICSSTLDHGVLLVGYGSAGYSPIRFKEKPYWIIKNSWGESWGEQGYYKICRGHNICGVDSMVSTVAAIHTTAL* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11425590 11427463 + Vvi18g1032 Vvi18g1032 780735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1032 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 328 347 IPR025661 -
Vvi18g1032 371 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Vvi18g1032 371 PRINTS Papain cysteine protease (C1) family signature 306 316 IPR000668 GO:0006508|GO:0008234
Vvi18g1032 371 PRINTS Papain cysteine protease (C1) family signature 328 334 IPR000668 GO:0006508|GO:0008234
Vvi18g1032 371 CDD Peptidase_C1A 140 363 IPR039417 -
Vvi18g1032 371 Pfam Papain family cysteine protease 139 362 IPR000668 GO:0006508|GO:0008234
Vvi18g1032 371 PANTHER CYSTEINE PROTEASE RD19C-RELATED 28 365 - -
Vvi18g1032 371 Pfam Cathepsin propeptide inhibitor domain (I29) 56 112 IPR013201 -
Vvi18g1032 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Vvi18g1032 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 304 314 IPR025660 -
Vvi18g1032 371 Gene3D Cysteine proteinases 32 364 - -
Vvi18g1032 371 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 365 - -
Vvi18g1032 371 SUPERFAMILY Cysteine proteinases 53 363 IPR038765 -
Vvi18g1032 371 SMART Inhibitor_I29_2 56 112 IPR013201 -
Vvi18g1032 371 SMART pept_c1 139 364 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1032 K01373 CTSF; cathepsin F [EC:3.4.22.41] - vvi:100250475 716.072
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g306 Vvi18g1032 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1032 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102