Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1034 ATGGCTGGGTACTTCTCACTAGGTGGGCGAGAGAGGGTGAATCTACGGGAAGAAGGAGAAGAAGAGAAGGTTGTGCACAACCCTGGAAACGAAATCCCCTCGAATAGCTTGTTTTTGTATAGAAACGAGGAGATCTACAACAAGGGTTTCGAGCTATGGCAACAGTACTGTCATCAACGGCTGCATCAACCGCAAAATATAGTATTCTCCTCCTCTGCAACATTCGGAGTCAGCACTCCTAGTGGAAGAACATACAACCTGTCTGATGAGTCGTGTAGATCGGGATTCACGGTGATGAGGCAAGGTGGAGGAGGAGGTGGCATGAATTGCCAGGACTGCGGCAACCAAGCCAAGAAGGACTGCATCCATATGAGATGCAGGACTTGCTGCAAGAGCCGAGGGTTTCCGTGCCCGACCCACGTCAAGAGTACTTGGGTTCCTGCTGCCAAAAGGCGAGAGAATCAGAAAAGGCAGAGAGAGAATCCAGTTGCTCCCGCTCTAGCTACCACCACGTCAGGGTTGGAAGTGGGACACTTTCCCTCTGAAGTTAATTCTCCGGCCTACTTCCGCTGCGTAAGAGTAAGCGCCATGGATGAGGCAGACGAGCAGTTGGCGTATCAGACTGCTGTTAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTATGATCACGGCCCTGAAAGTCGTTATGGGGGCGAGAGCTCCTCCGGTGGAGGCAGCGGCAGTCAACAACACAATCTTATCACTGCACCCCCCGGCGTAACTACTACAAGCAACCAAGCTACCACATTGCTTGATCCTTCTTTATACCCAGCTCCACTCAACGTTTTCATGGCGGGTACGCAATTCTTCCCACCCCCAAGACCTTAA 870 51.49 MAGYFSLGGRERVNLREEGEEEKVVHNPGNEIPSNSLFLYRNEEIYNKGFELWQQYCHQRLHQPQNIVFSSSATFGVSTPSGRTYNLSDESCRSGFTVMRQGGGGGGMNCQDCGNQAKKDCIHMRCRTCCKSRGFPCPTHVKSTWVPAAKRRENQKRQRENPVAPALATTTSGLEVGHFPSEVNSPAYFRCVRVSAMDEADEQLAYQTAVNIGGHVFKGILYDHGPESRYGGESSSGGGSGSQQHNLITAPPGVTTTSNQATTLLDPSLYPAPLNVFMAGTQFFPPPRP* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11486800 11488805 - Vvi18g1034 Vvi18g1034 780737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1034 289 Pfam Domain of unknown function (DUF702) 155 227 - -
Vvi18g1034 289 Pfam Domain of unknown function (DUF702) 107 159 - -
Vvi18g1034 289 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 287 - -
Vvi18g1034 289 MobiDBLite consensus disorder prediction 227 258 - -
Vvi18g1034 289 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 109 151 IPR006510 -
Vvi18g1034 289 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 178 226 IPR006511 -
Vvi18g1034 289 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 287 IPR007818 GO:0003700|GO:0006355
Vvi18g1034 289 MobiDBLite consensus disorder prediction 233 258 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1063 Vvi18g1034 ECH
Vvi3g16 Vvi18g1034 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14258 PF05142 DUF702 2.10E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1034 - - vvi:100260953 536.184