Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1034 | ATGGCTGGGTACTTCTCACTAGGTGGGCGAGAGAGGGTGAATCTACGGGAAGAAGGAGAAGAAGAGAAGGTTGTGCACAACCCTGGAAACGAAATCCCCTCGAATAGCTTGTTTTTGTATAGAAACGAGGAGATCTACAACAAGGGTTTCGAGCTATGGCAACAGTACTGTCATCAACGGCTGCATCAACCGCAAAATATAGTATTCTCCTCCTCTGCAACATTCGGAGTCAGCACTCCTAGTGGAAGAACATACAACCTGTCTGATGAGTCGTGTAGATCGGGATTCACGGTGATGAGGCAAGGTGGAGGAGGAGGTGGCATGAATTGCCAGGACTGCGGCAACCAAGCCAAGAAGGACTGCATCCATATGAGATGCAGGACTTGCTGCAAGAGCCGAGGGTTTCCGTGCCCGACCCACGTCAAGAGTACTTGGGTTCCTGCTGCCAAAAGGCGAGAGAATCAGAAAAGGCAGAGAGAGAATCCAGTTGCTCCCGCTCTAGCTACCACCACGTCAGGGTTGGAAGTGGGACACTTTCCCTCTGAAGTTAATTCTCCGGCCTACTTCCGCTGCGTAAGAGTAAGCGCCATGGATGAGGCAGACGAGCAGTTGGCGTATCAGACTGCTGTTAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTATGATCACGGCCCTGAAAGTCGTTATGGGGGCGAGAGCTCCTCCGGTGGAGGCAGCGGCAGTCAACAACACAATCTTATCACTGCACCCCCCGGCGTAACTACTACAAGCAACCAAGCTACCACATTGCTTGATCCTTCTTTATACCCAGCTCCACTCAACGTTTTCATGGCGGGTACGCAATTCTTCCCACCCCCAAGACCTTAA | 870 | 51.49 | MAGYFSLGGRERVNLREEGEEEKVVHNPGNEIPSNSLFLYRNEEIYNKGFELWQQYCHQRLHQPQNIVFSSSATFGVSTPSGRTYNLSDESCRSGFTVMRQGGGGGGMNCQDCGNQAKKDCIHMRCRTCCKSRGFPCPTHVKSTWVPAAKRRENQKRQRENPVAPALATTTSGLEVGHFPSEVNSPAYFRCVRVSAMDEADEQLAYQTAVNIGGHVFKGILYDHGPESRYGGESSSGGGSGSQQHNLITAPPGVTTTSNQATTLLDPSLYPAPLNVFMAGTQFFPPPRP* | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 11486800 | 11488805 | - | Vvi18g1034 | Vvi18g1034 | 780737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1034 | 289 | Pfam | Domain of unknown function (DUF702) | 155 | 227 | - | - | |
Vvi18g1034 | 289 | Pfam | Domain of unknown function (DUF702) | 107 | 159 | - | - | |
Vvi18g1034 | 289 | PANTHER | PROTEIN SHI RELATED SEQUENCE 7 | 1 | 287 | - | - | |
Vvi18g1034 | 289 | MobiDBLite | consensus disorder prediction | 227 | 258 | - | - | |
Vvi18g1034 | 289 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 109 | 151 | IPR006510 | - | |
Vvi18g1034 | 289 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 178 | 226 | IPR006511 | - | |
Vvi18g1034 | 289 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 287 | IPR007818 | GO:0003700|GO:0006355 | |
Vvi18g1034 | 289 | MobiDBLite | consensus disorder prediction | 233 | 258 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi4g1063 | Vvi18g1034 | ECH | |
Vvi3g16 | Vvi18g1034 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14258 | PF05142 | DUF702 | 2.10E-25 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1034 | - | - | vvi:100260953 | 536.184 |