Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1035 ATGTTGACGAAATTCGAGACGAAGAGTAATAGAGTTAAGGGACTGAGTTTTCACACTAAGAGGCCATGGATCCTTGCGAGTCTTCACAGCGGTGTGATCCAGCTATGGGATTACAGAATGGGGACTCTTATTGACAGATTTGATGAGCACGATGGACCAGTGCGTGGTGTGCATTTCCACAAATCTCAGCCGCTGTTTGTTTCTGGAGGAGATGATTACAAGATCAAGGTGTGGAATTATAAGTTACATAGGTGTTTATTTACCCTTTTTGGACACCTTGATTACATCCGCACAGTTCAGTTTCACCATGAGTATCCTTGGATTGTTAGTGCAAGTGATGACCAGACTATTAGAATATGGAACTGGCAGTCCCGCACTTTAATGTCTGTATTAACCGGACATAATCATTATGTCATGTGTGCCTCATTCCATCCCAAAGAGGACCTGGTTGTATCAGCCTCCTTAGATCAGACCGTTCGTGTTTGGGATATTGGTGCCTTGAGGAAGAAAACAAGTTCCCCTGCAGATGATATCCTGCGCTTGAGTCAAATGAACACAGATTTCTTTGGTGGAGTTGACGCTGTTGTTAAGTATGTTTTGGAGGGTCATGACCGAGGAGTGAATTGGGCTTCATTCCATCCCACTCTTCCTCTTATAGTCTCAGGAGCAGATGATCGCCAAGTGAAACTTTGGAGAATGAACGACACAAAGGCTTGGGAAGTAGATACTTTGAGGGGGCACATGAATAATGTTTCATGTGTCTTCTTTCATGCAAGGCAGGATGTGATTGTGTCAAATTCAGAGGATAAAAGTATTCGTGTTTGGGATGCAACAAAGCGAACTGGTATTCAGACATTTCGAAGGGAACATGACAGGTTCTGGATTCTTACGGCACATCCTGAAATGAACCTTCTTGCAGCTGGTCATGATAGTGGCATGATTGTCTTTAAGTTGGAGAGAGAACGTCCTGCCTTTTCTGTGAGTGGTGATTGTCTGTACTATGTCAAAGACCGCTTTCTCCGCTTGTACGAATTCTCAACTCAGAAGGACGCTCAGGTGATTCCAATTCGCAGGCCTGGTTCTGCTGCCTTGAATCAAGGCCCAAGAACTCTTTCTTACAGCCCTACAGAAAATGCTGTTTTGATTTGTTCAGATGTGGACGGGGGGTCATATGAACTCTATATTGTGCCCAGAGATAGCATTGGCAGGGGGGATACGGTTCAGGATGCAAAAAGAGGGGTTGGAGGGTCAGCAGTTTTTGTGGCTCGAAACAGGTTTGCTGTACTAGAAAAGAGCAGCAACCAAGTGTTAGTCAAGAACCTTAAAAATGAGATCGTGAAGAAGAGTGTTCTTCCTGTTGCTGCTGATGCAATATTTTATGCTGGAACTGGGAACCTGCTGTGCAGGGCAGAGGATAGAGTCGTTGTCTTTGATCTCCAGCAGAGGCTTGTTCTTGGGGAACTTCAAACATCTTTCATCAGGTATGTTGTTTGGTCAAACGACATGGAGAATGTTGCTTTGCTGAGCAAACATACTATCATAATAGCCAGTAAGAAACTCGAGCACCGGTGCACACTTCATGAGACAATCCGTGTAAAGAGTGGAGCCTGGGATGATAACGGGGTCTTCATATATACAACCCTGAATCACATTAAATATTGTCTTCCTAATGGTGATAATGGTATCATCAGGACCCTCGATGTCCCAGTATACATAACAAAAGTATCTCAAAACACTGTCTATTGCTTGGATCGAGATGGAAAAAACCTTGCTGTTGCAATCGATGCAACTGAATATGTCTTCAAGCTGTCCCTCCTGAAGAAGAGATTTGACCAGGTAATGAGCATGATCAGGAGCTCGGAGCTTTGTGGGCAGGCCATGATTGCTTACCTCCAGCAAAAGGGTTTCCCAGAGGTTGCTCTTCATTTTGTGAAGGATGAAAGGACTCGTTTCAACTTGGCACTAGAAAGTGGCAATATCCAGATCGCCGTTGCTTCTGCAAAGGAAATTGATAAGAAAGATCACTGGTATAGGTTGGGAGTGGAGGCCCTCCGTCAGGGTAATGCAGGCATTGTAGAATATGCATACCAAAGGACAAAGAACTTTGAGAGGTTATCCTTCCTCTATCTTGTAACAGGTAATATAGATAAATTGTCTAAAATGCTGAAAATTGCTGAAGTAAAGAATGATGTTATGGGCCAATTTCACAATGCCCTATACTTGGGTGATATTAGGGAGCGCGTCAAGATCTTGGAAAATGCTGGCCATTTGCCCCTTGCTTACATCACTGCTGCTGTCCATGGGCTCCATGACATTGCAGAACGTCTGGCTGCTGATCTTGGAGATAATGTCCCTTCTTTGCCTGAGGGAAAATCACATTCTCTTTTGATTCCTCCAAGTCCTATCATGTGTGGTGGAGATTGGCCCTTGTTGAGGGTCATGAAAGGAATATTTGAGGGCGGTCTTGATAATGTGGGCAGGAATGCTCAGGAAGAGGATGAAGAAGCTGCAGATGCTGATTGGGTTTTTATTGCCCCAACTCCTGGTATGCCTGTAAATCTAATTTGGACCCAAAGATCATCTCTTGCTGCAGAGCATGCTGCAGCTGGCAATTTTGATACTGCAATGCGTTTGCTGAGCCGGCAGCTTGGTATAAGGAATTTTGCTCCCTTGAAACCACTATTTTTTGATCTACACATGGGTAGCCACACTTACTTGCGTGCCCTTTCTTCATCTCCGGTGATCTCAGTAGCAGTTGAGAGGGGATGGAGCGAATCCTCCAGCCCTAATGTGAGGGGTCCACCTGCACTTGTGTTCAAATTCTCACAGTTGGAAGAAAAGCTAAAGGCTGGTCAAGGAATTGATCATCATTCAGCAAACTTTGCCCGGCGACTGTTGGAGACTAATCCCACCAATGAAAACCATGCCAAAACAGCCCGGCAAGTCCTGCAGGCTGCCGAGAGGAACATGACAGATGCATCCCCGCTGAATTATGACTTCAGAAACCCATTTGTTGTTTGTGGGGCAACCTACATCCCCATATACCGCGGACAGAAGGATGTGTCGTGCCCTTTCTGCAGTTCGCGATTTGTTCCTTCACAGGAAGGGCAGCTTTGTACTGTTTGTGATCTTGCGGTTATTGGATCTGATGCATCTGGATTGCTCTGTTCTCCTTCCCAGATAAGGTGA 3189 45.09 MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLFGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTLMSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTSSPADDILRLSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVFFHARQDVIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILTAHPEMNLLAAGHDSGMIVFKLERERPAFSVSGDCLYYVKDRFLRLYEFSTQKDAQVIPIRRPGSAALNQGPRTLSYSPTENAVLICSDVDGGSYELYIVPRDSIGRGDTVQDAKRGVGGSAVFVARNRFAVLEKSSNQVLVKNLKNEIVKKSVLPVAADAIFYAGTGNLLCRAEDRVVVFDLQQRLVLGELQTSFIRYVVWSNDMENVALLSKHTIIIASKKLEHRCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDNGIIRTLDVPVYITKVSQNTVYCLDRDGKNLAVAIDATEYVFKLSLLKKRFDQVMSMIRSSELCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDKKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLVTGNIDKLSKMLKIAEVKNDVMGQFHNALYLGDIRERVKILENAGHLPLAYITAAVHGLHDIAERLAADLGDNVPSLPEGKSHSLLIPPSPIMCGGDWPLLRVMKGIFEGGLDNVGRNAQEEDEEAADADWVFIAPTPGMPVNLIWTQRSSLAAEHAAAGNFDTAMRLLSRQLGIRNFAPLKPLFFDLHMGSHTYLRALSSSPVISVAVERGWSESSSPNVRGPPALVFKFSQLEEKLKAGQGIDHHSANFARRLLETNPTNENHAKTARQVLQAAERNMTDASPLNYDFRNPFVVCGATYIPIYRGQKDVSCPFCSSRFVPSQEGQLCTVCDLAVIGSDASGLLCSPSQIR* 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11496355 11502830 - Vvi18g1035 Vvi18g1035 780738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1035 1062 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 164 - -
Vvi18g1035 1062 PANTHER COATOMER 842 951 - -
Vvi18g1035 1062 PANTHER COATOMER 958 1024 - -
Vvi18g1035 1062 PANTHER COATOMER 1 800 - -
Vvi18g1035 1062 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 276 - -
Vvi18g1035 1062 Pfam Coatomer WD associated region 341 768 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Vvi18g1035 1062 Pfam Coatomer (COPI) alpha subunit C-terminus 831 950 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Vvi18g1035 1062 Pfam Coatomer (COPI) alpha subunit C-terminus 958 1062 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Vvi18g1035 1062 PANTHER COATOMER SUBUNIT ALPHA 1 800 - -
Vvi18g1035 1062 PANTHER COATOMER SUBUNIT ALPHA 958 1024 - -
Vvi18g1035 1062 PANTHER COATOMER SUBUNIT ALPHA 842 951 - -
Vvi18g1035 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Vvi18g1035 1062 SUPERFAMILY WD40 repeat-like 4 315 IPR036322 GO:0005515
Vvi18g1035 1062 Pfam WD domain, G-beta repeat 127 163 IPR001680 GO:0005515
Vvi18g1035 1062 Pfam WD domain, G-beta repeat 84 121 IPR001680 GO:0005515
Vvi18g1035 1062 Pfam WD domain, G-beta repeat 198 231 IPR001680 GO:0005515
Vvi18g1035 1062 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Vvi18g1035 1062 Pfam WD domain, G-beta repeat 45 79 IPR001680 GO:0005515
Vvi18g1035 1062 Gene3D - 640 812 - -
Vvi18g1035 1062 SMART WD40_4 279 317 IPR001680 GO:0005515
Vvi18g1035 1062 SMART WD40_4 193 232 IPR001680 GO:0005515
Vvi18g1035 1062 SMART WD40_4 124 163 IPR001680 GO:0005515
Vvi18g1035 1062 SMART WD40_4 2 37 IPR001680 GO:0005515
Vvi18g1035 1062 SMART WD40_4 82 121 IPR001680 GO:0005515
Vvi18g1035 1062 SMART WD40_4 237 276 IPR001680 GO:0005515
Vvi18g1035 1062 SMART WD40_4 40 79 IPR001680 GO:0005515
Vvi18g1035 1062 Gene3D - 1 319 IPR015943 GO:0005515
Vvi18g1035 1062 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 121 - -
Vvi18g1035 1062 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 47 79 - -
Vvi18g1035 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 88 IPR001680 GO:0005515
Vvi18g1035 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Vvi18g1035 1062 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Vvi18g1035 1062 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Vvi18g1035 1062 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vvi18g1035 1062 ProSitePatterns Trp-Asp (WD) repeats signature. 150 164 IPR019775 -
Vvi18g1035 1062 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 234 - -
Vvi18g1035 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 164 IPR001680 GO:0005515
Vvi18g1035 1062 CDD WD40 9 317 - -
Vvi18g1035 1062 SUPERFAMILY DPP6 N-terminal domain-like 245 593 - -
Vvi18g1035 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1035 K05236 COPA, RET1; coatomer subunit alpha - pvy:116130126 1731.46
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1035 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00761 Blo18g00790 Bda08g01238 Bda01g01520 Bpe02g01716 Bpe05g00125 Bma01g00740 Bma05g00150 . . . . . . . . . . . . . . . . Cla11g00380 Cam11g0427 Cec11g0421 Cco11g0415 Clacu11g0549 Cmu11g0406 Cre11g0892 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000684 3 4 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 4 3 3 3 3 3 3 3 2 3 7 4 1 99