Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1037 ATGGCTAGAGGAAAGATTGAGATCAAGAGGATAGAGAACTCGACGAACAGGCAGGTCACCTACTCCAAGAGACGAAATGGTATCTTCAAGAAGGCCAGTGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATCATCATGCTCTCCAGTACTGGAAAGCTCCATGAATACATCAGTCCTTCCACTACAACGAAACAAATATTTGATCAGTACCAGAACACTCTAGGAGTGGATCTATGGAGCTATCACTATGAGAGAATGCAAGAAAACCTGAAGAAACTGAAAGATGTGAACAAGAATCTCAGGAAGGAGATTAGGCAGAGGATGGGTGAACATTTGAGCGATTTGAGCGTTGAGGAACTGCGAGATCTTGAACAAGAGATGGAGAGTTCTTTGAAGATGGTTCGTGATAGGAAGTACCAGGTGATCAATAATCAGATTGAAACTTTCAAGAAAAAGGTAAGGAATGTGGAACAAATACACAAAAACCTCCTACATGAATTTGATGCAAGGGACAGAGATCAACACTATGGGCTAGTGGACAATGGAGGGGATTACGAATCTGTTCTTGGATTCTCAAATGGAAGCTCTCCGGTATTTGCCCTAAGCTTGCAGCCTAACCCGCCTAATGATCTTCACTCGGGTGTGGGCTCTGATTTGACCTTTACTTTGCTCGAGTAG 681 43.17 MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISPSTTTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEELRDLEQEMESSLKMVRDRKYQVINNQIETFKKKVRNVEQIHKNLLHEFDARDRDQHYGLVDNGGDYESVLGFSNGSSPVFALSLQPNPPNDLHSGVGSDLTFTLLE* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11506513 11512366 + Vvi18g1037 Vvi18g1037 780740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1037 226 Coils Coil 84 111 - -
Vvi18g1037 226 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g1037 226 Coils Coil 118 138 - -
Vvi18g1037 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Vvi18g1037 226 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Vvi18g1037 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g1037 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g1037 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g1037 226 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vvi18g1037 226 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Vvi18g1037 226 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g1037 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g1037 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g1037 226 Coils Coil 140 167 - -
Vvi18g1037 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi18g1037 226 PANTHER APETALA3 1 221 - -
Vvi18g1037 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1067 Vvi18g1037 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14259 PF01486 K-box 7.80E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1037 K09264 - vvi:100233029 439.884