Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1039 ATGGATTGTGCTGGTGCTTTTCAAGGTTGCAAAGGTTTCACGGAAAACACGGCCATTTCAACATACTTTTTCCTGTTCAACGCTGGTGCATCCTTGGAATCACTTGCTAAAGGTGCAGTGCAATTTTCTCGACGATTTACAGTTCGGGAACTGCAAGATCGGTGGCATTCTCTCCTCTATGACCCTGTTCTTTCTGGAGAAGCTTCTGCTCGCATGATTGAATTTGAACGTTCTGCTTCAACTCTTCCATCAAAATTTAATAGATTTGGAAATTCAAAAGAAAACAAATGTGTTCCTGGGAAGAGAAAAGCTGAAACTATCCGTAGTTGCTACTATGCCTTGCGTAAAAGGATCTGCAACGAGCCTTTTAACTCTATGGATCTAAGTTTTCTGGTTGCACCCAGTAACAGTAATTGTGTTGGAAATGGAGATGAGCCTGTATCTCCAAATTACATGCTCGAAGATCCAATATCAAATCATTTCAGAACTCAGGAACCAAGCTTGGATATCATGCATTGTGCTTTTCCTCAAATGGTGACAGATAATGCTGCTGCCAGTGGTGCTGGAACCAGTGCCCATGGATTTCATGCAGCAATTCCTCAAATTCTTGGAGAAAACTTGCCTCATACTGGGAATTGCTCTGGGATTGATGAATTAGGTGAACCAAAAGAATTGCTTGCCTGCAACCTGTTTGAAGCTGATGATTTAGAGGCAAAACCTCCCTCTACTTTTGATCTAATTAATAGTGATCTTGGCAATGTGTGCTCTGAATTTGGAGGAAACCAGGCCTTCGACTTGCCAGGTTCAGATTGTGGTGCTTCATTTGACAATTTAGGGTATTCATCTCCACTTCCTGGGATGCCAATCTGGGACACGGTTGAGGGTATTTCAGCCCCGGATCTTCCAGTTGATACAAGCCTTGGAAAAAAAGATCACCATACAGAAGATACATTTGCACTTCCTAATGATGGTCATGCTAAGATCAATAGTGTATCCGGATATGATGTTGTGCCCTCAGAAACCAAGTTAAAAAACTCAATGCCATGTGACCAATTGAACAATTCTAGCCCAGACGGTTATTTAGCGGAACTATCCAATTCTCTTTTGGACTTTCCCAATGATGAACTCCTTTTCATGGATGTTGATGGAAAAGATATAATTGATAAATCTTACTATGATGGTTTGAACTCACTTTTGTTGAGTTCTCCTACTGACAGTAATCAAGATCATGTGCCTGATATAACCGAACCTGAAGCATCAGTAGGTCCAGATGCATATCTAGTGATTCCTCAGGAGGCACCAATGCTATCAACTGCAGTGGATTTAAACCCTCAATTTCCTGAGATGTGTAATGGAGTTATTTGCTGCGCATTAAACACTGAGGACCCAGATATTCCATGCAATGATGATGTTTTTCTGCCTAATCAGATTCCCTTATCACCTCTTTCATCTGCAGCCCAACTAAGTTTTCATGAAGCTAATAACCCAACTTCTTCAGCTGTTAAGGATTTCACAGATAATCAAAAGAGTATTGGTGATTGTGACATTAAATTTGAGTTGACTGAAAGCGACTCCACACACATGGCATCTAGAAGTGCAGGTCTTGTTTGTGGCAATTCAAAAATTAAACCAGCTAGGCAAATGAGCTACAACTCAACTGATTCTTTCATGGAGAAGCCGGTTCATGGTTTTGATGGCTTTAGAAGCTATCCCCAGACAAATGCTTGTGGCATTAAACAGGAAGTAGATGCTATATCTACAGCTCAGAACCATCAAGCATTAGATTTTGCTGCACTGGACCCAGTAGTGAACCCCTCATCACCTGATCAGGAAGAACAACCTATTGAGAGTGATGATGACATACCGTATGTTTCTGATATTGAAGCAATGATACTTGATATGGACTTGGATCCAGATGACCAAGAGTATTGCCGTGGGGAAGTCTCAAGATACCAGTATGAGAACACTAAGAGGGCTATCATAAGGCTGGAGCAGGGTTTCCATTCTTATATGCAAAGAACCATTGCAACCCATGGGGCATTTGCTGTTTTATATGGACGCCATTCAAAGCATTATATTAAGAAACCAGAGGTTCTACTCGGTAGAGCCACAGAAGATGTTACTGTTGACATTGACTTGGGAAGAGAAGGGTGCGCAAATAAAATATCTCGTCGGCAGGCAATCATAAAAATGGAAAGAGGTGGATCGTTCTCTCTAAAAAATCTTGGCAAGCGGGCCATCTTAATGAATGGCAAGGATGTAGCCCCTGGCGAGAGTGTAAGCCTTACTTGTGGCTGTTTGATTGAGATAAGGGGAATGCCTTTCATATTTGAAACTAATCAAAACTCGTGTCAAGCTGTATGCGGATAA 2370 41.52 MDCAGAFQGCKGFTENTAISTYFFLFNAGASLESLAKGAVQFSRRFTVRELQDRWHSLLYDPVLSGEASARMIEFERSASTLPSKFNRFGNSKENKCVPGKRKAETIRSCYYALRKRICNEPFNSMDLSFLVAPSNSNCVGNGDEPVSPNYMLEDPISNHFRTQEPSLDIMHCAFPQMVTDNAAASGAGTSAHGFHAAIPQILGENLPHTGNCSGIDELGEPKELLACNLFEADDLEAKPPSTFDLINSDLGNVCSEFGGNQAFDLPGSDCGASFDNLGYSSPLPGMPIWDTVEGISAPDLPVDTSLGKKDHHTEDTFALPNDGHAKINSVSGYDVVPSETKLKNSMPCDQLNNSSPDGYLAELSNSLLDFPNDELLFMDVDGKDIIDKSYYDGLNSLLLSSPTDSNQDHVPDITEPEASVGPDAYLVIPQEAPMLSTAVDLNPQFPEMCNGVICCALNTEDPDIPCNDDVFLPNQIPLSPLSSAAQLSFHEANNPTSSAVKDFTDNQKSIGDCDIKFELTESDSTHMASRSAGLVCGNSKIKPARQMSYNSTDSFMEKPVHGFDGFRSYPQTNACGIKQEVDAISTAQNHQALDFAALDPVVNPSSPDQEEQPIESDDDIPYVSDIEAMILDMDLDPDDQEYCRGEVSRYQYENTKRAIIRLEQGFHSYMQRTIATHGAFAVLYGRHSKHYIKKPEVLLGRATEDVTVDIDLGREGCANKISRRQAIIKMERGGSFSLKNLGKRAILMNGKDVAPGESVSLTCGCLIEIRGMPFIFETNQNSCQAVCG* 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11528059 11539400 + Vvi18g1039 Vvi18g1039 780742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1039 789 PANTHER FHA DOMAIN PROTEIN 431 784 - -
Vvi18g1039 789 PANTHER FHA DOMAIN PROTEIN 27 421 - -
Vvi18g1039 789 ProSiteProfiles Forkhead-associated (FHA) domain profile. 698 754 IPR000253 GO:0005515
Vvi18g1039 789 CDD FHA 694 778 IPR000253 GO:0005515
Vvi18g1039 789 SUPERFAMILY SMAD/FHA domain 680 778 IPR008984 GO:0005515
Vvi18g1039 789 SMART FHA_2 697 754 IPR000253 GO:0005515
Vvi18g1039 789 PANTHER MICROSPHERULE PROTEIN 1 27 421 IPR037912 GO:0002151|GO:0031011|GO:0071339
Vvi18g1039 789 PANTHER MICROSPHERULE PROTEIN 1 431 784 IPR037912 GO:0002151|GO:0031011|GO:0071339
Vvi18g1039 789 Pfam FHA domain 699 770 IPR000253 GO:0005515
Vvi18g1039 789 Pfam N-terminal region of micro-spherule protein 37 77 IPR025999 -
Vvi18g1039 789 Gene3D - 652 787 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1039 - - - vvi:100254089 1487.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1068 Vvi18g1039 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1039 . . Bda01g00507 . Bpe02g00366 . . Bma01g02347 . . Cma01g01943 . Car01g01518 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g02005 . . . . . . Cpe02g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001875 2 6 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 11 13 2 67