Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1040 ATGAGGCGAGAAGTAGGTAGCCTGGGGTTCTGTTTATCTTGTCTACTTGCGGTGATTACGGTTTCGGAAGTGGTGATTACAGGAGATTCAAGAACCCATTCAGGAGACATTCAAATTCTCAAAGATTTTAAAAATGGGCTCAACCCTGGTTCCATCACCCCCGGCTCTTGCTTGAGCTCCTGGGACTTCTCTGTGGATCCATGCGATTACTTATTCAGCGACCGCTTCACTTGTGGCTTCAGGTGCGACCGCCTCGTCGCCGGCGCCAGCCGGGTTACCGAGATCACCCTTGACCAGGCTGGTTACACCGGCACACTCTCTTCCTCCACCTGGAACCTCCCTTTTCTGCAATTTCTCGACCTCTCTGATAACTCCTTCTCCGGCTCCATACCCGACTCCTTCTCCAACCTCACTCGTCTCCGCCGCCTCACTCTCTCTCGAAACTCCTTCTCCGGGGAGATACCCAACTCCCTCGGCTCTCTCCCTAACCTCGAGGAACTCTATCTCGATAACAACCATCTCCAAGGTCCCATTCCAGCCAGCATTAACGGTCTGATAAGCTTGAAAAAGTTAGAACTTCAAGAAAACGCCCTGTCGGGCGCGTTTCCAGATCTGGGTTCTCTTAAAAACCTCTATTTTTTGGACGCCAGCGATAACCAAATCTGCGGCCAAATCACAACTGCTTTACCGGCGTCCCTATTGGAGCTCTCTATCCGAAACAACAACTTGGAAGGAAACCTACCACATAGATTAGGGAGCTTGAAGTATCTGCAGGTAATGGATCTGAGCGACAACAAACTCTCCGGGGTGATATCATGGATCGTGTTCGACCACCCATCACTGCAACAGCTCACACTCTCTCACAACAACTTCTCCTTGTTGCAAGTGCCGAGCAACATGGGTGAGGGTAGTAAATTGATAGCTCTTGATCTGAGCTACAACCAACTTGGAGGACTGTTGCCGGCGTTCATAGCGTCGATGCCGAACCTGTCGGCAGTGTCATTGGAGCACAACAAGTTCACAGGGATGATACCGTCTCAGTATGCATTGAAGACAGTGGTTGGTGGTGGGGGTGGAACGGCGTCGTTTGAGAGGCTGTTGCTGGGTGGTAACTACTTATTCGGGCCGATACCCGGTCCACTAATGTTTCTGAAACCCGGTTATGCTAACGTGAGCCTGGTGGACAATTGTTTGTATCGGTGCCCTAATAGTTTCTTCTTTTGTCAAGGTGGGACTCAGAAGTCCCTGGTTGATTGTAAGAATTTTAGGCACTCAATCCCATAG 1284 50.39 MRREVGSLGFCLSCLLAVITVSEVVITGDSRTHSGDIQILKDFKNGLNPGSITPGSCLSSWDFSVDPCDYLFSDRFTCGFRCDRLVAGASRVTEITLDQAGYTGTLSSSTWNLPFLQFLDLSDNSFSGSIPDSFSNLTRLRRLTLSRNSFSGEIPNSLGSLPNLEELYLDNNHLQGPIPASINGLISLKKLELQENALSGAFPDLGSLKNLYFLDASDNQICGQITTALPASLLELSIRNNNLEGNLPHRLGSLKYLQVMDLSDNKLSGVISWIVFDHPSLQQLTLSHNNFSLLQVPSNMGEGSKLIALDLSYNQLGGLLPAFIASMPNLSAVSLEHNKFTGMIPSQYALKTVVGGGGGTASFERLLLGGNYLFGPIPGPLMFLKPGYANVSLVDNCLYRCPNSFFFCQGGTQKSLVDCKNFRHSIP* 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11539927 11541211 + Vvi18g1040 Vvi18g1040 780743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1040 427 SMART LRR_typ_2 113 136 IPR003591 -
Vvi18g1040 427 SMART LRR_typ_2 161 185 IPR003591 -
Vvi18g1040 427 SMART LRR_typ_2 137 160 IPR003591 -
Vvi18g1040 427 SMART LRR_typ_2 279 303 IPR003591 -
Vvi18g1040 427 SMART LRR_typ_2 208 236 IPR003591 -
Vvi18g1040 427 PANTHER OS10G0469600 PROTEIN 8 427 - -
Vvi18g1040 427 SUPERFAMILY L domain-like 74 351 - -
Vvi18g1040 427 Pfam Leucine rich repeat N-terminal domain 35 69 IPR013210 -
Vvi18g1040 427 Gene3D Ribonuclease Inhibitor 204 295 IPR032675 -
Vvi18g1040 427 Gene3D Ribonuclease Inhibitor 34 203 IPR032675 -
Vvi18g1040 427 PRINTS Leucine-rich repeat signature 116 129 - -
Vvi18g1040 427 PRINTS Leucine-rich repeat signature 254 267 - -
Vvi18g1040 427 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 8 427 - -
Vvi18g1040 427 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Vvi18g1040 427 Pfam Leucine rich repeat 233 291 IPR001611 GO:0005515
Vvi18g1040 427 Gene3D Ribonuclease Inhibitor 296 422 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1040 - - - vvi:100259205 847.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g251 Vvi18g1040 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0834 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012152 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 30