Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1041 ATGAAGATCCACTGCGACGTCTGTAGTAGAGAAGAAGCGACGGTGTTTTGCACCGCCGACGAGGCAGCTCTCTGCGACGCCTGCGACCACCGGGTCCACCACGCCAACAAGCTCGCCTCCAAGCACCAGCGCTTCTCTCTTCTCCACCCCTCCCCTAAGCAGGTCCCTCTCTGCGACGTATGCCAGGAGAAGAGAGCTTTCCTATTCTGTCAGCAGGACCGAGCAATTCTATGTAGAGACTGCGATCTTCCAATTCACACCGCCAACGAGCACACCCAGAAGCACAACAGGTTCCTTCTCACTGGCATCAAGCTTTCTGCCACTTCTGCGCTCTACTCCTCTACCACCAGCGTCGCAGATTCTGTTTCCGATCACAAGTCTCAGTCCTCTCTCAAGAAGCCCGAGTCGGTGCCTCCTGAGATCTCCCATCCACCGTCCATCACCAAGACTTCATCGCCAACAACCGCCATAAACAGCATAAACAAGGGTGGGGATGCTTCTCTAACAAGTGAAGGTGTTTCAACCAGTAGTATATCAGAGTACTTGATCGAGATGTTACCAGGCTGGCATGTTGAGGATTTTTTGGATTCCACTTCTGCTCCTTCTGGTTTCTGTAAGAGTGCTGGTGATGATGTACTACCTTATCTTCTTGATGCGGATCTTGACAACAATCTGAGTAGCTTCTCGTCAGAAAATTTGGGGGTTTGGGTTCCTCAAGCTCCCACTCCTCTCCATCCTTCTCAATATTCGTCATTCATGGGTGGGCAGATTGGGTTGAAAGAGTCCAAGGAAGCTACAACCATGAAACCCAACAGCAAAAAGTGGGGAGACGATGTTTTTACAGTTCCACAGATCAGCCCTCCATCTGTAGGCTCCAAGAGATCTAGATCTTTCTGGCAGTATCACCACTAA 912 50.66 MKIHCDVCSREEATVFCTADEAALCDACDHRVHHANKLASKHQRFSLLHPSPKQVPLCDVCQEKRAFLFCQQDRAILCRDCDLPIHTANEHTQKHNRFLLTGIKLSATSALYSSTTSVADSVSDHKSQSSLKKPESVPPEISHPPSITKTSSPTTAINSINKGGDASLTSEGVSTSSISEYLIEMLPGWHVEDFLDSTSAPSGFCKSAGDDVLPYLLDADLDNNLSSFSSENLGVWVPQAPTPLHPSQYSSFMGGQIGLKESKEATTMKPNSKKWGDDVFTVPQISPPSVGSKRSRSFWQYHH* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11546245 11548336 + Vvi18g1041 Vvi18g1041 780744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1041 303 MobiDBLite consensus disorder prediction 123 153 - -
Vvi18g1041 303 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi18g1041 303 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vvi18g1041 303 Gene3D Classic Zinc Finger 1 99 - -
Vvi18g1041 303 CDD Bbox1_BBX-like 57 100 - -
Vvi18g1041 303 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 297 - -
Vvi18g1041 303 MobiDBLite consensus disorder prediction 268 303 - -
Vvi18g1041 303 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi18g1041 303 CDD Bbox1_BBX-like 5 47 - -
Vvi18g1041 303 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vvi18g1041 303 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 - -
Vvi18g1041 303 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vvi18g1041 303 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1041 - - - vvi:100264386 585.874
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g18 Vvi18g1041 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g959 . 88 439 C2C2-CO-like Transcription Factor Family AT5G15850 57.1 3.8e-65 245.7
Vvi14g959 . 71 439 C2C2-CO-like Transcription Factor Family AT3G02380 58.8 5.1e-75 278.5
Vvi4g625 . 1 308 C2C2-CO-like Transcription Factor Family AT5G24930 57.1 1.1e-72 270.8
Vvi12g737 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 9.6e-96 347.4
Vvi12g737 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.5e-91 332.8
Vvi12g737 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.5e-91 332.8
Vvi18g1041 ECH 1 299 C2C2-CO-like Transcription Factor Family AT1G75540 51.4 2.3e-80 296.2
Vvi19g32 . 1 294 C2C2-CO-like Transcription Factor Family AT1G78600 51.4 3.3e-76 282.3
Vvi3g45 ECH 1 196 C2C2-CO-like Transcription Factor Family AT2G21320 58.6 2.6e-59 225.3
Vvi4g1083 ECH 1 183 C2C2-CO-like Transcription Factor Family AT2G21320 60.1 5.5e-54 207.6
Vvi3g45 ECH 1 211 C2C2-CO-like Transcription Factor Family AT4G38960 63.0 2.2e-69 258.8
Vvi4g1083 ECH 1 182 C2C2-CO-like Transcription Factor Family AT4G38960 63.7 4.6e-59 224.6
Vvi3g18 ECH 1 169 C2C2-CO-like Transcription Factor Family AT4G39070 52.2 1.0e-50 197.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14260 PF00643 zf-B_box 1.50E-06 No_clan Vvi TF