Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1041 ATGAAGATCCACTGCGACGTCTGTAGTAGAGAAGAAGCGACGGTGTTTTGCACCGCCGACGAGGCAGCTCTCTGCGACGCCTGCGACCACCGGGTCCACCACGCCAACAAGCTCGCCTCCAAGCACCAGCGCTTCTCTCTTCTCCACCCCTCCCCTAAGCAGGTCCCTCTCTGCGACGTATGCCAGGAGAAGAGAGCTTTCCTATTCTGTCAGCAGGACCGAGCAATTCTATGTAGAGACTGCGATCTTCCAATTCACACCGCCAACGAGCACACCCAGAAGCACAACAGGTTCCTTCTCACTGGCATCAAGCTTTCTGCCACTTCTGCGCTCTACTCCTCTACCACCAGCGTCGCAGATTCTGTTTCCGATCACAAGTCTCAGTCCTCTCTCAAGAAGCCCGAGTCGGTGCCTCCTGAGATCTCCCATCCACCGTCCATCACCAAGACTTCATCGCCAACAACCGCCATAAACAGCATAAACAAGGGTGGGGATGCTTCTCTAACAAGTGAAGGTGTTTCAACCAGTAGTATATCAGAGTACTTGATCGAGATGTTACCAGGCTGGCATGTTGAGGATTTTTTGGATTCCACTTCTGCTCCTTCTGGTTTCTGTAAGAGTGCTGGTGATGATGTACTACCTTATCTTCTTGATGCGGATCTTGACAACAATCTGAGTAGCTTCTCGTCAGAAAATTTGGGGGTTTGGGTTCCTCAAGCTCCCACTCCTCTCCATCCTTCTCAATATTCGTCATTCATGGGTGGGCAGATTGGGTTGAAAGAGTCCAAGGAAGCTACAACCATGAAACCCAACAGCAAAAAGTGGGGAGACGATGTTTTTACAGTTCCACAGATCAGCCCTCCATCTGTAGGCTCCAAGAGATCTAGATCTTTCTGGCAGTATCACCACTAA 912 50.66 MKIHCDVCSREEATVFCTADEAALCDACDHRVHHANKLASKHQRFSLLHPSPKQVPLCDVCQEKRAFLFCQQDRAILCRDCDLPIHTANEHTQKHNRFLLTGIKLSATSALYSSTTSVADSVSDHKSQSSLKKPESVPPEISHPPSITKTSSPTTAINSINKGGDASLTSEGVSTSSISEYLIEMLPGWHVEDFLDSTSAPSGFCKSAGDDVLPYLLDADLDNNLSSFSSENLGVWVPQAPTPLHPSQYSSFMGGQIGLKESKEATTMKPNSKKWGDDVFTVPQISPPSVGSKRSRSFWQYHH* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11546245 11548336 + Vvi18g1041 Vvi18g1041 780744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1041 303 MobiDBLite consensus disorder prediction 123 153 - -
Vvi18g1041 303 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi18g1041 303 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vvi18g1041 303 Gene3D Classic Zinc Finger 1 99 - -
Vvi18g1041 303 CDD Bbox1_BBX-like 57 100 - -
Vvi18g1041 303 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 297 - -
Vvi18g1041 303 MobiDBLite consensus disorder prediction 268 303 - -
Vvi18g1041 303 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi18g1041 303 CDD Bbox1_BBX-like 5 47 - -
Vvi18g1041 303 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vvi18g1041 303 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 - -
Vvi18g1041 303 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vvi18g1041 303 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g18 Vvi18g1041 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14260 PF00643 zf-B_box 1.50E-06 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1041 - - vvi:100264386 585.874