Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1042 ATGGAAGCAATCAGGAAGCAAGCCACAAAGATTATAGACCAGGTCGCAAAGCAACAGCAGGCTGTTCTCAAGCAGTTTTCTGGTGGTGGTTATGGTGGCCCAGATAATGTCCTCACTGATGAGTCAGAACTTCAGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAGCATTTCCAAAGGGATATTGTCCGTGGTGTGGAAGGTTTCATAGTTACTGGGTCCAAGCAAGTTGAAATAGGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTACCAGTGGCAGTACCTTATCTAAAGCTGCATTAAGCTTTGCTAGAGCTCGTGCTCAAATGGAAAAGGAGCGTGGAAATCTACTGAAAGCTCTTGGCACCAAGGTTGGAGAACCCTTAAGAGCAATGGTAATGGGAGCTCCCTTGGAGGATGCTCGACATCTTGCTCAACGATATGAGAGAATGCGAATGGAAGCTGAAGCTCAGGCTATAGAAGTTTCCAAACGTCAAATTAAGGCGAGGGAATCCATGGGCAATCCTGATAATGTTTTGAAGCTGGAGGCTGCTGAAGCCAAGCTTCATGAGCTGAAGTCAAACACAGCAATATTAGGTAAAGAAGCGGTCTCCGCAATGGCAGCTGTAGAAGGCCAACAACAAAGGTTGACTCTTCAGCGAATTATTGCCATGGTTGAATCAGAGCGCAGTTATCATCAAAGTGTCCTGCAGATACTTGATCAGCTAGAAAGTGAGATGCTGGCAGAGCGTCAACGAATTGAAGCTTTTCCTAGTCCAACTGCAAATAATGCCATGCCTCCTCCCCCATCATATGATGAAGTGAACAATGTCTTTGCTTCTCAAACATACGGTGAATCAACTGGCAGCATGGGCTATTTCTTAGGAGAAGTCATGCATTCATTTCAAGCTGAATCTGATGTGGAGTTGAATTTGTCAGTTGGTGATCATGTTGTGATCCGAAAGGTGTCAAACAGTGGCTGGGCAGAAGGTGAATGCAGAGGAAAAGCAGGTTGGTTCCCAGTTGGATACATAGAAAGACGAGAACGCGTTCTTGCAAGCAAGTTGGTGTGA 1107 44.99 MEAIRKQATKIIDQVAKQQQAVLKQFSGGGYGGPDNVLTDESELQQHQKLEKLYISTRAGKHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDSRKYGVENTCTSGSTLSKAALSFARARAQMEKERGNLLKALGTKVGEPLRAMVMGAPLEDARHLAQRYERMRMEAEAQAIEVSKRQIKARESMGNPDNVLKLEAAEAKLHELKSNTAILGKEAVSAMAAVEGQQQRLTLQRIIAMVESERSYHQSVLQILDQLESEMLAERQRIEAFPSPTANNAMPPPPSYDEVNNVFASQTYGESTGSMGYFLGEVMHSFQAESDVELNLSVGDHVVIRKVSNSGWAEGECRGKAGWFPVGYIERRERVLASKLV* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11552101 11558455 - Vvi18g1042 Vvi18g1042 780745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1042 368 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Vvi18g1042 368 Coils Coil 149 176 - -
Vvi18g1042 368 Gene3D SH3 Domains 294 366 - -
Vvi18g1042 368 SUPERFAMILY SH3-domain 300 361 IPR036028 GO:0005515
Vvi18g1042 368 SMART SH3_2 305 360 IPR001452 GO:0005515
Vvi18g1042 368 Pfam Variant SH3 domain 309 357 IPR001452 GO:0005515
Vvi18g1042 368 PANTHER SH3 DOMAIN-CONTAINING 1 367 - -
Vvi18g1042 368 Gene3D Arfaptin homology (AH) domain/BAR domain 45 268 IPR027267 -
Vvi18g1042 368 Coils Coil 193 213 - -
Vvi18g1042 368 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 361 IPR001452 GO:0005515
Vvi18g1042 368 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 2 1 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1042 - - - vvi:100264255 707.597
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g26 Vvi18g1042 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1042 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00372 Cam11g0417 Cec11g0413 Cco11g0406 Clacu11g0540 Cmu11g0397 Cre11g0884 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37