Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1043 ATGAGTTCACGTAGCACCAGCAGGAGCAGGAGTCAGAGTCGGAGCCGGAGCAGGAGTCCACGAGATCGCAGGATCCGATCTCAACGCTTGTCCTATCGTGATGCTCCTTATAGGAGAGAGTCACGTAGGGGTTTCAGCCAAGGCAATCTGTGCAACAACTGCAAGCGGCCAGGTCACTTTGCAAGAGAATGCCCTAATGTGGCTATTTGTAACAACTGTAACCTTCCTGGGCACATTGCATCAGAGTGCACCACACAATCATTATGTTGGAATTGTCGAGAACCAGGTCACATGGCCAGCAACTGTCCCAATGAGGGAATCTGCCATTCGTGCAATAAGACTGGTCATCGTGCCAGAGACTGCCCAACTCCTGGGTTGCCATCTGGGGACTTGAGGTTGTGCAATAACTGCTACAAGCAAGGTCATATTGCAGCTGACTGTACAAATGATAAGGCATGCAAGAACTGCAGGAAGACTGGCCACATAGCACGTGACTGTCAGAATGAACCAGTTTGCAACTTGTGCAACATAGCTGGGCATGTGGCTAGGCAATGCCCAAAGGCCGAGATTTTTGGAGAGAGGGGTGGTGGGGGTCGCAACACTGGTTTTCGAGATGTTATCTGCAGGAGCTGCAACCAGGTGGGTCATATGAGCAGGGATTGCATGGTTTCCTTGGTCATATGTAATAACTGCGGTGGTAGGGGCCATATGGCATTTGAATGCCCATCGGGAAGATTTATGGACCTTGTAATTTGCATGAGTTCATTGAATCAAAGTCCTACTGGACCCTTCTTTGTGGGAGTCCCTTCGATCAGGTAG 819 50.06 MSSRSTSRSRSQSRSRSRSPRDRRIRSQRLSYRDAPYRRESRRGFSQGNLCNNCKRPGHFARECPNVAICNNCNLPGHIASECTTQSLCWNCREPGHMASNCPNEGICHSCNKTGHRARDCPTPGLPSGDLRLCNNCYKQGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKAEIFGERGGGGRNTGFRDVICRSCNQVGHMSRDCMVSLVICNNCGGRGHMAFECPSGRFMDLVICMSSLNQSPTGPFFVGVPSIR* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11561349 11567821 - Vvi18g1043 Vvi18g1043 780746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1043 272 ProSiteProfiles Zinc finger CCHC-type profile. 228 243 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SUPERFAMILY Retrovirus zinc finger-like domains 130 169 IPR036875 GO:0003676|GO:0008270
Vvi18g1043 272 PANTHER OS10G0545300 PROTEIN 7 249 - -
Vvi18g1043 272 Gene3D - 106 150 - -
Vvi18g1043 272 Gene3D - 151 202 - -
Vvi18g1043 272 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 ProSiteProfiles Zinc finger CCHC-type profile. 70 83 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SMART c2hcfinal6 69 85 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SMART c2hcfinal6 107 123 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SMART c2hcfinal6 152 168 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SMART c2hcfinal6 207 223 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SMART c2hcfinal6 227 243 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SMART c2hcfinal6 88 104 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SMART c2hcfinal6 133 149 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SMART c2hcfinal6 50 66 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 ProSiteProfiles Zinc finger CCHC-type profile. 108 122 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 ProSiteProfiles Zinc finger CCHC-type profile. 51 66 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 ProSiteProfiles Zinc finger CCHC-type profile. 172 187 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 Gene3D - 203 245 - -
Vvi18g1043 272 MobiDBLite consensus disorder prediction 24 39 - -
Vvi18g1043 272 ProSiteProfiles Zinc finger CCHC-type profile. 153 168 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SUPERFAMILY Retrovirus zinc finger-like domains 198 245 IPR036875 GO:0003676|GO:0008270
Vvi18g1043 272 ProSiteProfiles Zinc finger CCHC-type profile. 134 149 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 ProSiteProfiles Zinc finger CCHC-type profile. 208 221 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 SUPERFAMILY Retrovirus zinc finger-like domains 42 86 IPR036875 GO:0003676|GO:0008270
Vvi18g1043 272 Gene3D - 68 105 - -
Vvi18g1043 272 SUPERFAMILY Retrovirus zinc finger-like domains 87 124 IPR036875 GO:0003676|GO:0008270
Vvi18g1043 272 Gene3D - 38 67 - -
Vvi18g1043 272 PANTHER - 7 249 - -
Vvi18g1043 272 MobiDBLite consensus disorder prediction 1 39 - -
Vvi18g1043 272 Pfam Zinc knuckle 227 243 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 Pfam Zinc knuckle 207 221 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 Pfam Zinc knuckle 107 122 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 Pfam Zinc knuckle 50 66 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 Pfam Zinc knuckle 133 149 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 Pfam Zinc knuckle 152 167 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 Pfam Zinc knuckle 70 84 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 Pfam Zinc knuckle 171 187 IPR001878 GO:0003676|GO:0008270
Vvi18g1043 272 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1043 K09250 CNBP; cellular nucleic acid-binding protein - vvi:100241979 490.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g39 Vvi18g1043 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1043 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42