Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1044 ATGGGGAAGAAGAAGTTCATCGACAAGAAAAAATCCGCAACATTCCAGTTACTCGCTCGCGACTCATCCGATCCCAATTACCAAGATTCACCAGGTCATGATCGAGTCTTCATTAGGGTTGACAACAATCCATATTCAGTCGACGCCATTACTTCATCGCAGCTGTCAATTGGTGCGACGGCGGCGGCGGTGCCGTTGCCGGATCATGTGAGGAGAGAGATTTTGGAGCTAGGGTTTCCTGATGATGGCTATAACTATTTGACTCATTTAAGGGAGATCAAGAATACTGGAGGCGGTTCGGCGTTTTATCATAACAGTAAGGCCAGGCTTGATCAGCTTCCCCTTGATGTCAAGGGATATGATGCTTCAAGAGTTCATATTGGAGATGTGAAAAGAGACCCGGATGAGAAGGCCCTTTACAGTGTTGCAGAGAAGACTGTCGGTGTGAGGCTTCAGAAAGCAGTTGATCCTGAAGTGGCTGCATTGTTAGATTCCAAGGATTCTGTGTTTGGTTCTGATGTAGAGGATTTGGAAGAGGATTTTGTTATTCAGGCTAATATTCATGAAGAAGGGAAGGATGATTTCATTGGTAAGAAATTAACAAAAGAAGATGTCGATGAATCTTACACCCAAGAACCACAAGAAGACCCGGTTGAATTTGTTGGTCATGATGAAATAAGAAACCAATTTGTAGGAGCTGGAGATGACATTATTATTAGCGAGGAGCCAAGAGTTCACCGTCTTTTGGATGAGCAATTTGATCAGCTTGAGCGTATGGAATATGGCACAGAAAGTGATGATGATTATGGTGGTTCTGTAGCTGAGGATTATGAATCTCTTGCAGACAAGCTAAATCATGCTCTTAAGGACCATGCGACAGATGACTTGGAACTTAATGAAAAATATAGGGTTCCTGCAGATTTATTGCATGACAAAGAGGGACTAAAAGATTCAGGGTCATTGGACTCATCTGCTGATGTGATTCGTCGTTGTGTGGAATATGCTGAAAAGTATGAAAATGAAGACCCAAATGAAGATGTTGTTGTTCTAGAGGAAAGTAGTGATGAATCCGGAGGGTGGGATTGTGAAACTATTGTTTCTACATATTCAAATCTTGATAATCACCCAGGAAAAATTGAAGCCCCAGAAATAACTAGAAAGAAAAAGTTGGTTGAAACTGTCTCTGGACCCTTAAGTGCCACCAATCATGTAATACCCCTTCGAGGGAAAGAGAAGCTCCCTGTTGACTTTTTGCCTCGTGGTAAAAAACCTTCTACAGAGAAGGCTAAGGATGTGAGTAGCCTGAGAGCTGAGCAGCAGAAGAGGAAGAAACATGGTCAGGAGGAAAAGAAAGAAAAGAAAGAACGAAAGACTGCTGTAAAAGAGGAACGGCGAGAGGCACGGCGTGTGAAAAAGGAAACAAAGGAGATGTACAAGTCTGAAACCCAGCGTGCTCAAAGAGTTGCTGCTATTTCTGGCCCATCTTCAATTCATCTTTCGTAA 1503 42.85 MGKKKFIDKKKSATFQLLARDSSDPNYQDSPGHDRVFIRVDNNPYSVDAITSSQLSIGATAAAVPLPDHVRREILELGFPDDGYNYLTHLREIKNTGGGSAFYHNSKARLDQLPLDVKGYDASRVHIGDVKRDPDEKALYSVAEKTVGVRLQKAVDPEVAALLDSKDSVFGSDVEDLEEDFVIQANIHEEGKDDFIGKKLTKEDVDESYTQEPQEDPVEFVGHDEIRNQFVGAGDDIIISEEPRVHRLLDEQFDQLERMEYGTESDDDYGGSVAEDYESLADKLNHALKDHATDDLELNEKYRVPADLLHDKEGLKDSGSLDSSADVIRRCVEYAEKYENEDPNEDVVVLEESSDESGGWDCETIVSTYSNLDNHPGKIEAPEITRKKKLVETVSGPLSATNHVIPLRGKEKLPVDFLPRGKKPSTEKAKDVSSLRAEQQKRKKHGQEEKKEKKERKTAVKEERREARRVKKETKEMYKSETQRAQRVAAISGPSSIHLS* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11577343 11581941 + Vvi18g1044 Vvi18g1044 780747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1044 500 MobiDBLite consensus disorder prediction 415 500 - -
Vvi18g1044 500 Coils Coil 436 477 - -
Vvi18g1044 500 Pfam Low temperature viability protein 8 213 IPR007307 GO:0042274
Vvi18g1044 500 MobiDBLite consensus disorder prediction 415 482 - -
Vvi18g1044 500 PANTHER LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED 1 499 IPR007307 GO:0042274
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1044 K14798 LTV1; protein LTV1 - vvi:100247237 905.205
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1044 . Blo12g00897 . . . Bpe04g00230 Bma04g00226 . . . Cma01g01947 . Car01g01521 . . . . . . . . . . . . . . . . . . . . Cone17ag1380 Cone20ag0103 Lsi04g01717 . . . . . . . . . . . . . . . . . . . Cpe02g00092 . . . . . . . Cla05g01899 Cam05g2035 Cec05g2043 Cco05g2099 Clacu05g2027 Cmu05g1907 Cre05g2029 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004778 0 1 1 1 1 1 1 1 1 1 1 1 1 4 2 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35