Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1046 ATGGGTGATATTGGTGGTGAGGAACCAGGGCATTGGAACGCAAAGGGACAAGAGGAGAAGATTTTAGTCTCAGTGAGGTTGAGGCCTTTGGATGTCAAAGAAAATTCAAGGTACCATGTCTCAGATTGGGAATGCATCAATGTGAACACCATTATATACAAGAACAGCCTCAGCTTACCTGAACGATCCCAGTTTCCAACTGCCTATACCTTTGACAGAGTATTTGGACAAAACTGCTCGACAAGGGAAGTGTATGATGAAGGAGCCAAAGAAGTTGCTCTTTCAGTTGTCAATGGTATTAACTCAAGCATTTTTGCATATGGGCAAACAAGTAGCGGAAAAACATACACCATGACTGGAATTACTGAATATGCAGTATCAGATATATATGACTACGTGGAGAGGCATAGAGATAGAGAATTTAAATTGAAGTTCTCTGCCATGGAGATCTACAATGAAGCTCTCAGAGACCTACTCAGCTCAGATAGTGCTCCACTCAGACTTCTAGATGATCCAGAGAGAGGGACTGTTGTTGACAAACTTACGGAGGAGACTCTGAGGGATAGGAACCATCTACAGGAGCTCCTTTCCATATGTGAAGCCCAAAGACAGATAGGGGAGACTGCCCTGAATGAAACAAGCTCCAGATCTCATCAAATTCTCCGATTGACAATTGAAAGTTCTGCTCATAAATTTGTAGGAGCTGAGAACTCAAGCAGTCTTGCAGCTACTGTGAGTTTTGTTGATCTTGCGGGAAGTGAACGTGCTTCTCAGACATTATCAGAGGGTACAAGATTGAAAGAAGGTTGCCACATAAATCGCAGTTTACTAACCCTGGGAACTGTTATTCGCAAATTAAGCAAAGGAAGAAATGTGCACATACCATATAGAGACTCTAAGCTGACACGCATTCTACAGAACTCCTTAGGAGGCAATGCTAGAACTGCCATCATTTGCACTATGAGCCCTGCACGCAGTCATATTGAGCAATCAAGAAACACTCTCTTGTTTGCAAGTTGTGCTAAAGAGGTGTCAACAAATGCGCATGTCAATGTAGTGATGTCAGATAAGATATTGGTAAAGCATTTGCAGAGAGAAATGGCTAGACTGGAGAGTGAGTTGAGAAGTTTAGAATTAAATCATGCTGCCAATGATTCTACCGCACTACTGAAGGAGAAAGAGCTTCTGATTGAAAAGATGGATAAAGAGATAAAGGATTTAACTCAACAACGCGATCTTGCTCACTCTCAAATTGAGGATTTGCTCAAATCAATTGGAGAAGATCAATCAAAACAATCGGTATTTAGAGTTATGGAATCTGATCAGATTTCAGAACACCAAGTGCAAAATACATGGTCAGATGAACCTTCAGCATCAGAATCATCAGATATGCCTAATTCCCATTGCCTGGATTTGGATCTCACAACATGCAGCTCATCTCAGTATTCTGACCACGACAATGGCCTTAATTCCAGAGGGGACAGCCTACAGCTTCCTGAGAATTCTGAAAACCACTTTCCATCTGATGATGCTTCTTCAATACTGTCAACGAATACTCCAATATTTGTTGGGCCCAATCCATGTCAGGGGTGGGAGAAGACCATTCAGGGACTGGATAGGAACACAGAAGATGATACTTCTTTACCTTGTCCAGAAGAGAAAGATGGAAAGTTAGCTTTGACGGTGGCTGGGGATACAGATGCGATATCATCTCATGGTTCTTTGGAGCAAAAAATTCAGGACATGAAAAAGACCATTGAGAGCCTTTTCAGTATGTATCCTCTAGAACCATCTCTTTGTTTCACTGAGGCAGACAAGTCTAGCTCCAGAAGCTTGAGGTTGAATAGAAGCAGAAGTTGTAGATCAGTTATCATGACTATCCAATCTCCATTGTTTGATGAGGCAGAACAGGGTGAGAGCATACTGCCAAATGGTTTAGACGAAGATTTCCCTGGAAGACCAGAAGGCTTCCTGCCAAAGCTTGCTGAAATGGAGTTTGGTGATGGCATGAAAAAATTTTCCAGACAAGATTCTCGAACTTCTGTTAGAAGTGTTTCCATGGATGAAAAAGCACAGAATGTCAAGACATCGGGTGAATGGGATACCAACAGTGCCCACGATTTTGTTGCAAAATTGAATGAAATGGCCGAAGTTCAGTCTGCAATGGAACTTGGTGATGATACGGTTAGAATGCAACTCACTCTCTCTCCCCACTTTTCATTTACATTTGATAGTCTTGGTTCTGGTGCAATCCATTTCTTTTTGGTCAGAATTTCTGGCTTACTTCTTTCAGTTCTTTGTTTAATCACAACTAGCTTGATATATACACATACTCAATTCCAAGAAAAATCTTGTGATGGACATCTTCATGAAATGATAGGAAAAGTCATGGAGACGACACCAGATGCTGACGACACTGCAGGGAAAAATAAAGTTGACCGGGATACTAAGCAGAATGCTTCTAAATCTTTAAGTTGGGCCTTAGAATTTAAAAGGCAACAGAGAGAGATAATTGCACTTTGGGATTCATGCAATGTACCTTTGGTTCATAGAACCTATTTCTTCCTGCTCTTCAAGGGTAATAAATTGGACTCTGTTTACATGGAGGTAGAGCTAAGAAGGTTGTATTTTCTTAAGGAGTCATTTTCTCATGGAAGTGGAGCTGTGAAAGATGACCAACCTCTCACTCTGGCTTCAAGCAAGAGGGCTCTGAATCGCGAGAGGGAGATGTTGATCAAGCAAGTGCAGAAGCGGTTCTCCCGAAAGGAGATGGAGACGATTTACCAGAAGTGGGGTATCGATTTGGACTCAAAGCAGAGGAAGTTACAATTGGTACGACGTATTTGGAGTGACATCAGAGACATGAACCACATTAGGGAGAGTGCTGCCCTTGTTGCTAAGTTAGTTGGGTTCATAGTGCCAAGTGAGGCGCCCCAGGAGATTTTTGGACTCAGCTTCTCACCTAAACCCATGACCCGGAGGTCCTACAGCTGGAGAAGCAACGTGTCTTCTTTGTCAGGAGTTTGA 3027 42.25 MGDIGGEEPGHWNAKGQEEKILVSVRLRPLDVKENSRYHVSDWECINVNTIIYKNSLSLPERSQFPTAYTFDRVFGQNCSTREVYDEGAKEVALSVVNGINSSIFAYGQTSSGKTYTMTGITEYAVSDIYDYVERHRDREFKLKFSAMEIYNEALRDLLSSDSAPLRLLDDPERGTVVDKLTEETLRDRNHLQELLSICEAQRQIGETALNETSSRSHQILRLTIESSAHKFVGAENSSSLAATVSFVDLAGSERASQTLSEGTRLKEGCHINRSLLTLGTVIRKLSKGRNVHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHIEQSRNTLLFASCAKEVSTNAHVNVVMSDKILVKHLQREMARLESELRSLELNHAANDSTALLKEKELLIEKMDKEIKDLTQQRDLAHSQIEDLLKSIGEDQSKQSVFRVMESDQISEHQVQNTWSDEPSASESSDMPNSHCLDLDLTTCSSSQYSDHDNGLNSRGDSLQLPENSENHFPSDDASSILSTNTPIFVGPNPCQGWEKTIQGLDRNTEDDTSLPCPEEKDGKLALTVAGDTDAISSHGSLEQKIQDMKKTIESLFSMYPLEPSLCFTEADKSSSRSLRLNRSRSCRSVIMTIQSPLFDEAEQGESILPNGLDEDFPGRPEGFLPKLAEMEFGDGMKKFSRQDSRTSVRSVSMDEKAQNVKTSGEWDTNSAHDFVAKLNEMAEVQSAMELGDDTVRMQLTLSPHFSFTFDSLGSGAIHFFLVRISGLLLSVLCLITTSLIYTHTQFQEKSCDGHLHEMIGKVMETTPDADDTAGKNKVDRDTKQNASKSLSWALEFKRQQREIIALWDSCNVPLVHRTYFFLLFKGNKLDSVYMEVELRRLYFLKESFSHGSGAVKDDQPLTLASSKRALNREREMLIKQVQKRFSRKEMETIYQKWGIDLDSKQRKLQLVRRIWSDIRDMNHIRESAALVAKLVGFIVPSEAPQEIFGLSFSPKPMTRRSYSWRSNVSSLSGV* 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11600519 11607671 + Vvi18g1046 Vvi18g1046 780749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1046 1008 SMART kinesin_4 18 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1046 1008 CDD KISc_CENP_E 20 344 - -
Vvi18g1046 1008 Coils Coil 353 380 - -
Vvi18g1046 1008 PANTHER CENTROMERE PROTEIN E 14 1004 - -
Vvi18g1046 1008 Pfam Domain of unknown function (DUF3490) 829 988 IPR021881 -
Vvi18g1046 1008 ProSiteProfiles Kinesin motor domain profile. 20 344 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1046 1008 Gene3D Kinesin motor domain 11 375 IPR036961 -
Vvi18g1046 1008 ProSitePatterns Kinesin motor domain signature. 243 254 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi18g1046 1008 Pfam Kinesin motor domain 26 344 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1046 1008 PRINTS Kinesin heavy chain signature 99 120 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1046 1008 PRINTS Kinesin heavy chain signature 208 225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1046 1008 PRINTS Kinesin heavy chain signature 244 262 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1046 1008 PRINTS Kinesin heavy chain signature 294 315 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1046 1008 PANTHER KINESIN-LIKE PROTEIN KIN-7H 14 1004 - -
Vvi18g1046 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 378 IPR027417 -
Vvi18g1046 1008 Coils Coil 390 424 - -
Vvi18g1046 1008 MobiDBLite consensus disorder prediction 480 519 - -
Vvi18g1046 1008 MobiDBLite consensus disorder prediction 442 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1046 K11498 CENPE; centromeric protein E - vvi:100257491 1393.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g46 Vvi18g1046 ECH
Vvi4g1085 Vvi18g1046 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32