Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1047 ATGCTAACGGCTATTTTTCTCTACCTCTCCTTGCTTCTCTTCGCCCCAACGCTGACCTGCGCCCAGCGGAGCGCCGATGCCTTGTCTGAAATCAAAGCCTTGACGGCCTTCAAACTCAATCTACACGATCCGCTAGGCGCATTGGACGGCTGGAACTCGTCGACCCCTTCCGCTCCCTGTGACTGGCGGGGCATTCTCTGTTACAATGGCCGAGTTTGGGAACTTCGCTTACCTCGTCTCCAACTCGGTGGCCGACTCACTGACCAACTCTCTAACCTTCGCCAACTTCGCAAGTTAAGTCTTCACTCTAACGCCTTTAACGGCTCTGTTCCTCTTTCTCTCTCCCAGTGCTCTCTTCTACGCGCCGTTTATTTACATTACAACTCATTTTCCGGTGGTCTCCCGCCGGCTCTCACCAACCTCACCAACCTTCAAGTGCTCAATGTTGCCCACAACTTTCTCTCTGGTGGAATCCCCGGGAACCTCCCGAGGAATCTCCGCTATCTCGACCTTTCTTCAAACGCCTTCTCCGGCAATATTCCAGCTAACTTTTCTGTGGCTTCTTCGCTTCAGCTCATCAACCTTTCGTTCAACCAGTTCTCCGGTGGGGTTCCGGCTAGCATCGGAGAGCTTCAACAGCTTCAGTATCTGTGGTTGGACTCGAACCAGTTGTATGGAACCATCCCTTCTGCGATATCCAACTTATCCACGCTAAGAATTCTAGATCTTTCTGGAAACTTCTTCTCTGGTGTTCTACCCATTGAAATCGGAAATCTCCTGAGACTGGAGGAGTTGAGAGTTGCTAATAATTCGCTACAGGGTGAGGTTCCTCGTGAGATTCAGAAATGCAGTTTGTTACAGGTTCTTGATCTGGAAGGAAATCGATTTTCAGGTCAACTTCCTCCATTTTTGGGCGCATTAACGAGCTTGAAGACGTTATCTCTAGGGAGAAACCATTTCTCAGGTTCCATTCCAGCAAGTTTTCGGAACCTCTCACAGTTGGAAGTATTGAATCTGAGCGAAAATAACTTGATTGGGGACGTACTCGAAGAGCTATTGCTTCTTAGCAATTTGAGTATCTTAAACCTAAGCTTCAACAAATTTTATGGGGAAGTTCCGGCTACCTTTGGATTTCTTCAGTCCTTAGTTGTTCTCTCATTGTCTCAAAATCATGTTTCCAGTGTAATTCCATCAGAGCTTGGTAATTGTTCTGATCTGGAAGCACTTGAGCTCCGGTCCAATCGATTGAGCGGTGAAATCCCCGGTGAACTCTCTCGTCTATCCCATTTGAAGGAACTCGATCTGGGTCAGAATAATTTGACAGGTGAAATCCCAGAAGATATATCTAATGGAGTCATTCCAGTGAACTTTTCAGGCATCTCTACCTTGAAATACTTGAACCTTTCACAGAACAACCTGGAAGGAGAAATTCCTAAAATGCTGGGTTCTCAATTTACAGATCCTTCAGTTTTTGCAATGAATCCAAAGTTATGCGGAAAGCCATTGAAAGAGGAATGCGAGGGCGTGACCAAGAGAAAAAGGAGGAAACTGATTCTTTTAGTTTGTGTGGCTGTTGGTGGAGCCACCCTTCTGGCATTGTGTTGTTGTGGCTATATTTTCAGTCTATTGCGTTGGCGTAAGAAACTTAGAGAAGGGGCAGCCGGGGAGAAGAAGCGGAGCCCAGCCCCAAGCTCTGGAGGAGAAAGAGGCCGTGGGAGCGGTGAAAATGGAGGGCCAAAACTCGTTATGTTCAACAACAAAATAACCTACGCGGAAACATTAGAGGCAACCAGACAATTTGACGAGGAAAATGTCTTGAGCAGGGGAAGATATGGACTTGTATTCAAGGCCTCTTTCCAAGATGGCATGGTCCTATCAATCCGCCGCCTTCCAGATGGGTCCATCGAAGAGAACACCTTCCGTAAAGAAGCAGAATCACTGGGCAAAGTGAAGCACAGAAACCTAACAGTCCTACGCGGCTACTATGCAGGACCACCGGACGTCAGGCTCCTCGTTTACGACTACATGCCTAATGGAAATCTGGCCACCCTGCTCCAGGAAGCCTCTCACCAAGATGGGCACGTCCTCAATTGGCCAATGCGCCATCTGATTGCACTTGGCATTGCCCGTGGCCTATCCTTCCTCCACTCAGTTTCAATGGTTCATGGAGATGTGAAGCCACAAAACGTCCTCTTTGATGCGGATTTCGAAGCCCATCTCTCTGATTTCGGGTTAGACCGATTAACCATACCAACCCCGGCTGAACCTTCCTCCTCCACAACCCCAATTGGGTCACTAGGCTATGTTTCACCGGAGGCGGCATTGACCGGAGAAGCTGACGTGTACAGTTTCGGAATCGTATTGCTAGAGATATTGACAGGTAGGAAACCAGTGATGTTCACACAAGACGAAGACATTGTAAAATGGGTGAAAAAACAGTTACAAAGAGGTCAAATTTCAGAATTACTGGAACCGGGGTTGCTGGAAATCGACCCGGAGTCATCTGAATGGGAAGAATTCTTATTGGGGGTGAAAGTTGGGTTGCTATGCACAGCACCCGACCCGCTTGATAGACCCTCCATGTCAGACATCGTATTCATGCTTGAAGGTTGCCGGGTCGGACCAGATATTCCATCCTCAGCTGATCCAACCTCCCTCCCCTCCCCCGTATCTGGTGGCAAATTCAACCGCTCATAA 2697 48.16 MLTAIFLYLSLLLFAPTLTCAQRSADALSEIKALTAFKLNLHDPLGALDGWNSSTPSAPCDWRGILCYNGRVWELRLPRLQLGGRLTDQLSNLRQLRKLSLHSNAFNGSVPLSLSQCSLLRAVYLHYNSFSGGLPPALTNLTNLQVLNVAHNFLSGGIPGNLPRNLRYLDLSSNAFSGNIPANFSVASSLQLINLSFNQFSGGVPASIGELQQLQYLWLDSNQLYGTIPSAISNLSTLRILDLSGNFFSGVLPIEIGNLLRLEELRVANNSLQGEVPREIQKCSLLQVLDLEGNRFSGQLPPFLGALTSLKTLSLGRNHFSGSIPASFRNLSQLEVLNLSENNLIGDVLEELLLLSNLSILNLSFNKFYGEVPATFGFLQSLVVLSLSQNHVSSVIPSELGNCSDLEALELRSNRLSGEIPGELSRLSHLKELDLGQNNLTGEIPEDISNGVIPVNFSGISTLKYLNLSQNNLEGEIPKMLGSQFTDPSVFAMNPKLCGKPLKEECEGVTKRKRRKLILLVCVAVGGATLLALCCCGYIFSLLRWRKKLREGAAGEKKRSPAPSSGGERGRGSGENGGPKLVMFNNKITYAETLEATRQFDEENVLSRGRYGLVFKASFQDGMVLSIRRLPDGSIEENTFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLSFLHSVSMVHGDVKPQNVLFDADFEAHLSDFGLDRLTIPTPAEPSSSTTPIGSLGYVSPEAALTGEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEIDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMSDIVFMLEGCRVGPDIPSSADPTSLPSPVSGGKFNRS* 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11608622 11613651 + Vvi18g1047 Vvi18g1047 780750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1047 898 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 238 - -
Vvi18g1047 898 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 450 886 - -
Vvi18g1047 898 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 235 446 - -
Vvi18g1047 898 Pfam Leucine rich repeat 356 416 IPR001611 GO:0005515
Vvi18g1047 898 Pfam Leucine rich repeat 237 296 IPR001611 GO:0005515
Vvi18g1047 898 Pfam Leucine rich repeat 164 224 IPR001611 GO:0005515
Vvi18g1047 898 Gene3D Ribonuclease Inhibitor 27 209 IPR032675 -
Vvi18g1047 898 MobiDBLite consensus disorder prediction 553 580 - -
Vvi18g1047 898 Gene3D Phosphorylase Kinase; domain 1 578 675 - -
Vvi18g1047 898 SUPERFAMILY L domain-like 53 202 - -
Vvi18g1047 898 Pfam Leucine Rich Repeat 463 480 IPR001611 GO:0005515
Vvi18g1047 898 Pfam Leucine Rich Repeat 309 331 IPR001611 GO:0005515
Vvi18g1047 898 SMART serkin_6 600 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1047 898 ProSiteProfiles Protein kinase domain profile. 600 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1047 898 SUPERFAMILY Protein kinase-like (PK-like) 579 879 IPR011009 -
Vvi18g1047 898 PANTHER LRR RECEPTOR-LIKE KINASE 235 446 - -
Vvi18g1047 898 PANTHER LRR RECEPTOR-LIKE KINASE 3 238 - -
Vvi18g1047 898 PANTHER LRR RECEPTOR-LIKE KINASE 450 886 - -
Vvi18g1047 898 MobiDBLite consensus disorder prediction 877 898 - -
Vvi18g1047 898 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vvi18g1047 898 Gene3D Transferase(Phosphotransferase) domain 1 676 876 - -
Vvi18g1047 898 SMART LRR_sd22_2 307 333 - -
Vvi18g1047 898 SMART LRR_sd22_2 141 171 - -
Vvi18g1047 898 SMART LRR_sd22_2 379 400 - -
Vvi18g1047 898 SMART LRR_sd22_2 427 450 - -
Vvi18g1047 898 SMART LRR_sd22_2 211 237 - -
Vvi18g1047 898 Pfam Leucine Rich repeat 428 443 IPR001611 GO:0005515
Vvi18g1047 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 720 732 IPR008271 GO:0004672|GO:0006468
Vvi18g1047 898 MobiDBLite consensus disorder prediction 881 898 - -
Vvi18g1047 898 SUPERFAMILY RNI-like 164 500 - -
Vvi18g1047 898 Pfam Protein kinase domain 602 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1047 898 Gene3D Ribonuclease Inhibitor 213 509 IPR032675 -
Vvi18g1047 898 SMART LRR_typ_2 379 403 IPR003591 -
Vvi18g1047 898 SMART LRR_typ_2 93 117 IPR003591 -
Vvi18g1047 898 SMART LRR_typ_2 259 283 IPR003591 -
Vvi18g1047 898 SMART LRR_typ_2 331 356 IPR003591 -
Vvi18g1047 898 SMART LRR_typ_2 211 235 IPR003591 -
Vvi18g1047 898 SMART LRR_typ_2 427 451 IPR003591 -
Vvi18g1047 898 SMART LRR_typ_2 307 330 IPR003591 -
Vvi18g1047 898 SMART LRR_typ_2 141 165 IPR003591 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76336 PF00069 Pkinase 5.10E-31 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1047 - - vvi:100262619 1105.12