Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1048 ATGGCGGAAGAGATGACTAAGGCGGAGCTTGGATCCTCCTCCTCAACTACTAAATCCAGATCTTTGTGGCCTTCTCTTTTCCGTTGGATCCCTACCTCTACCGATCATATCATCGACGCCGAAAAGCGTCTTCTCTCCTTAGTCAAGACTCCTTATGTTCAAGAACAGGTTAATATAGGGTCTGGGCCACCTGGGTCCAAAGTCAGGTGGTTTCGGTCTGCCAGCAATGAACCAAGGTTTATCAACACAGTTACTTTTGACAGCAAAGATGATTCTCCTACTCTTGTAATGGTTCATGGATATGGTGCTTCTCAAGGTTTCTTTTTCCGGAATTTTGATGCTCTTGCTAGACGATTCAGGGTCATCGCCATTGATCAACTAGGTTGGGGTGGATCAAGCAGGCCTGACTTCACTTGCAAAAGTACCGAAGAGACTGAGGCTTGGTTCATTGATTCCTTTGAGGAGTGGCGTAAAGCCAAAAACCTTAGCAACTTTATATTGCTTGGGCACTCTGTCGGGGGCTATGTTGCAGCTAAATATGCTCTCAAGCATCCTGAGCACATTCAGCACTTGATTTTGGTGGGACCTGCTGGATTTTCATTGGAATCAGATGGTAAGTCAGAGTGGCTTACACGGTTCAGAGCAACATGGAAAGGAGCTGTTCTGAACCATTTGTGGGAATCTAATTTTACTCCTCAGAAGCTTGTCAGAGGTATTGGCCCTTGGGGTCCAGATCTTGTACGCAAGTATACAAGTGCTAGATTTAGTTCATATTCAACTGGTGATTTGTTAACTGAAGAGGAGTCCAAGTTACTCACAGATTATGTGTACCATACTGTAGCAGCCAAAGCTAGTGGAGAGCTGTGCTTGAAATACATATTTTCATTTGGAGCATTTGCTCGGTTGCCCCTTCTGCACAGCGCATCAGAATGGAAAGTGCCAACCACTTTTATATATGGCTTTGAAGATTGGATGAACTACCAAGGAGCCCAAGAAGCTCGCAAGCAAATGAAGGTCCCATGTGAAATTATTAGGGTCCCCCAGGCTGGGCATTTTGTATTCATAGACAATCCCTCTGGGTTCCACTCGGCTGTATTGTATGCTTGCCGCAGATTTCTCTTGCCTGACCCTGATAGTCAATCCCTTCCTGAAGGCTTGACATCTGCCTAA 1170 45.47 MAEEMTKAELGSSSSTTKSRSLWPSLFRWIPTSTDHIIDAEKRLLSLVKTPYVQEQVNIGSGPPGSKVRWFRSASNEPRFINTVTFDSKDDSPTLVMVHGYGASQGFFFRNFDALARRFRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSVGGYVAAKYALKHPEHIQHLILVGPAGFSLESDGKSEWLTRFRATWKGAVLNHLWESNFTPQKLVRGIGPWGPDLVRKYTSARFSSYSTGDLLTEEESKLLTDYVYHTVAAKASGELCLKYIFSFGAFARLPLLHSASEWKVPTTFIYGFEDWMNYQGAQEARKQMKVPCEIIRVPQAGHFVFIDNPSGFHSAVLYACRRFLLPDPDSQSLPEGLTSA* 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11613660 11620349 - Vvi18g1048 Vvi18g1048 780751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1048 389 PANTHER RE40534P-RELATED 14 376 - -
Vvi18g1048 389 SUPERFAMILY alpha/beta-Hydrolases 82 366 IPR029058 -
Vvi18g1048 389 Pfam alpha/beta hydrolase fold 93 358 IPR000073 -
Vvi18g1048 389 PANTHER BNAA01G13630D PROTEIN 14 376 - -
Vvi18g1048 389 PRINTS Alpha/beta hydrolase fold signature 118 133 IPR000073 -
Vvi18g1048 389 PRINTS Alpha/beta hydrolase fold signature 167 180 IPR000073 -
Vvi18g1048 389 PRINTS Alpha/beta hydrolase fold signature 181 194 IPR000073 -
Vvi18g1048 389 Gene3D alpha/beta hydrolase 79 369 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1048 - - - vri:117906652 797.734
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1048 . . . . . . . . Cmo05g00292 Cmo12g00376 . . . Car12g00402 . . Cpe07g00381 Bhi04g00231 . . . Hepe10g0128 . . Cla08g01442 Cam08g1923 Cec08g1498 Cco08g1634 Clacu08g1613 . Cre08g1399 . . Cone17ag1385 Cone20ag0096 . . . Cme03g01901 Blo17g00754 Blo18g00786 Bda08g01233 Bda01g01523 Bpe02g01720 Bpe05g00128 Bma01g00736 Bma05g00154 . . . Cma12g00426 Cma05g00286 Car05g00236 . Cpe11g00237 . . . . . . . . . . . . . . . Lsi08g01344 Csa02g02111 Chy03g01405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009164 2 1 2 2 2 0 1 1 0 1 0 0 0 1 1 1 0 2 1 0 1 1 1 1 1 1 1 5 3 1 34