Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1051 ATGTTTTCAAATGCAAAAACCACAGCTGGACGATTGCATCTGGCCAAAGAGTTGTTGACTTTTCCTGTTGAAGCTCTGAAGTCCTTTGCTGGGACCAAAGAAGGGCTTTGCACACTCAACTCATGGATACTGGATTCAATGGGGAAGGATGGGACTCAACTCTTACGTCATTGCGTTCGTCTTCTTGTGCTTGTTTCAACAGATCTAATTGCAGTCCGCTTGTCAGGTATTGGTAAAACTGTGAAAGAAAAAGTTTGTGTACATACTAGCCGTGACATACGTGCCATAGCAAGCCAGCTGGTAAATGTGTGGATTGAAGTTTTCCGCAAGGAAAAAGCTTCTAATGGTGGACTCAAGTTACTGAAACAAACAACTGCCTCAAACTCTGCAAAGGGCAAATCTTTCAAGGATCTGGCTTCAGGAAAGCCACCTATACGTGTGCATCATGGTGCACTAGATTTTAAAGGAAGTTCACAGGTTTCTGCATCTGCTCGAAGCCATTCTCCTTCCAGTGCAAGTATTAAGAAAGATAATGGGAAGCCAGTCAAGTTGGAAAGCATGACTAACTCCAAACCGGATGGTAATCAATCAAGGTCACCAGGATCGGTAGGCAGAATGGATGTTGAGGGGGAGGAGGGCAATAATTTAATGTCTGAAGAAGAAAAGGTTGCCTTTGCTGCGGCTGAAGCAGCCCGTGCTGCTGCTCTTGCAGCTGCTGAGGCTTATGCATCTGAAGCCAAGAGCAACACATCACTGCAGCTTCCTAAGATACCCTCATTTCACAAATTTGCTAGAAGGGAGCAATATGCACAAATGGATGAGAATTGGTCTGTTGATTTTCCTGCCGCTTGTGTCAACCTTGAAAGTTCGAGAATGTCAGCTGATAACCACTCGCAACGGAGCCATTCAAATGATATTGCATGCCCATGGCAATCTCAAGCAGCAGCGGCTGATTCTGATTTCTACCAGTCAACTAGGCACATACGGGATGAGGAAGATTCTAACACAATTTCACAACCACCAACCTGGAAGCATGATAGACAGGCAAATGAAAGCTCTGTTTCTCATGCTGTGGTGGATTATGTTGGATCATTGCTCATGCCTCTTTATAAAGCAAGAAAAATTGATAAGGAAGGATATAAGTCAATAATGAAGAAAAGTGCAACTAAGGTTATGGAGCAGGCCACAGATGTGGAGAAAACTATGGCTGTTTCTGAGTTTCTTGATTTCAAACGCAGGAATAAGATACGTTCATTTGTGGACAAGTTGATTGAGAGGCACATGGCGATGAACCCAGTTGGAAATCCTTGA 1311 43.86 MFSNAKTTAGRLHLAKELLTFPVEALKSFAGTKEGLCTLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLIAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVNVWIEVFRKEKASNGGLKLLKQTTASNSAKGKSFKDLASGKPPIRVHHGALDFKGSSQVSASARSHSPSSASIKKDNGKPVKLESMTNSKPDGNQSRSPGSVGRMDVEGEEGNNLMSEEEKVAFAAAEAARAAALAAAEAYASEAKSNTSLQLPKIPSFHKFARREQYAQMDENWSVDFPAACVNLESSRMSADNHSQRSHSNDIACPWQSQAAAADSDFYQSTRHIRDEEDSNTISQPPTWKHDRQANESSVSHAVVDYVGSLLMPLYKARKIDKEGYKSIMKKSATKVMEQATDVEKTMAVSEFLDFKRRNKIRSFVDKLIERHMAMNPVGNP* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11636130 11641171 - Vvi18g1051 Vvi18g1051 780754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1051 436 MobiDBLite consensus disorder prediction 156 216 - -
Vvi18g1051 436 PANTHER FLAVIN MONOAMINE OXIDASE 136 432 - -
Vvi18g1051 436 MobiDBLite consensus disorder prediction 335 350 - -
Vvi18g1051 436 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 32 116 IPR035441 -
Vvi18g1051 436 MobiDBLite consensus disorder prediction 156 175 - -
Vvi18g1051 436 MobiDBLite consensus disorder prediction 328 350 - -
Vvi18g1051 436 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 136 432 - -
Vvi18g1051 436 MobiDBLite consensus disorder prediction 183 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1051 - - - vvi:100255769 764.222
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1051 . Blo12g00895 Bda01g00502 . . Bpe04g00232 Bma04g00227 Bma01g02351 . . . . . . . . . Bhi04g00234 . . . . . . Cla08g01440 Cam08g1920 Cec08g1496 . Clacu08g1610 . Cre08g1396 . . . . . . . Cme03g01899 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43