Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1052 ATGGATGATGAGGAGAAGAAGTCCGGTTCTAAACGGAGATTGAAGCATATAGAGATTGGATTTGATTCAGATGATGATGAGCCTATTGGGTCTATATTTAAGTTGAGGAGGCAGACAAACCCTAAGAAGGTAAAGTTGGGATTGGACAGTGGTGGTAAGACTGGGGAGAAGTTGAAGAGTGTTGAAGCTAGGGCAGAGAAATTGGTGGGGGAAGATGAGGAGTTGGGGGGAATGGATGATACATTGGCGAGCTTTAGGAAGAAACTAAGAGGTCCAAAGAAAGATACTGGATCTGGAACAGCAGTGGTTAGGGGATCAAATTTGAATGTGGTGGAACTGAAGGATGTGGAGGAAGGTAGAGGAATTCGCGATTATGGTTCTGATGTGACTATGGACAAAGGGTTAGAAAAGAAGTTGAAAAGAAAATCTAAGAGATCCAAGATTGTTTCCACAAAGAAGAAAACTGGAGATTCAGTGTGTCAAAGGTCAGAGGGTTCATCATTACAGGATCAAAAAGAGATGGGCTTATGGCTTGAGAAAGGAACTTCCAGTGATAGTGATGGTCCAAATCAGATTCCTTTTACCTCCATTGAGGAGCCTGATTGTGCTTCAGTGGATTTGGAAAAGGAGGAAGATGCCTTAATACCTGATGCAGGGCTATCTTCCATCGCTCCAACCTCAGCTGGAGTTCATGAATCTGGGTTTGCTTCCCAGATGGATTGTCCGGAGAAATCTGTAGAAACCGATCATCTGGATGAGTCTTTCCCCTTAATCCAGAAGTGCGACTCTGATTTTCATCAAAATCAACCTTCTCATGATGCATCAAGGGGGGATCATGTTCCAATTCATGATTATCTTTCTGCCAGTGAAGAGGCCAATGGAGCCTCTTCTCCATCCATAACTCCAGACAAAAATGACGCCTATCCAGAAGATGCTGGATCCATGCCTGATCCTGAAATCCAGGATAATAAGTCATCATCAGCTCAGCGCACGTTGCGCAAGCCTAAGAAGCATAGGCAGAGGGACATGGCTTATGAGGGGGATGCTGATTGGGAGATTCTGATACATGAGCAAAGTTTTCCTCAAAGTCACCTGGTTGAAGATACTGACCAGCCCTTAAGAACAAGAGGGAAGTTTGATTCCTCTCTAAATATGGTTTCAGGGACTGATAATGGTGGGGCAGCAGCAGTATCAGTTGGGCTGAAAGCTCGTGCAGTTGGTCCAGTTGAAAAGATAAAGTTTAAGGAGGTCTTGAAGCGGAAAGGTGGGCTTCAAGAATACTTGGAATGCAGGAATCTTATCTTGGGTCTTTGGGGTAAAGATATGAGCCGCATTTTGCCCCTTGCAGACTGTGGAGTGGCTGATACGCCTTCCAAGGATGAACCACCACGTGCTTCCCTAATAAGGGAGATCTATGTGTTTCTTGATCACAGAGGTTATATAAATGTTGGAATTGCTTCTGAAAAGGAGAAAGCAGATCCTGATTCTAAGCATAATTACAAACTTCTAAAAGAGAAAACCTTTGGGGAAAAGTCTGGAATTGCTATTGCTGATTCAGAGGATGGAGTTTCGACATTGGAGCCATCCACTCTGGTTGAACCCAAAGAATGCCTGGCAGATGATTACCAGGAACATGGTTGCATGGATGCAAATGAATTCAACAGAAAAGTCAATTTGGATGTTTCGGAGTCATCATGCAGAATAGATGACAGTGGAACAATTCCTACTATAGCTCCAGAGTTGATGAATGAGTCATGTGGTGTTGAATCTGCCTCAATGGATAGTGCCAAGAGGGATCACAATGTGCAGTTTGATTCAGATGTCAGAAAAAAAATCATTGTTGTTGGAGCTGGTCCTGCTGGCTTAACTGCAGCACGCCACTTGCAACGCCATGGTTTTTCTGTCATTGTGCTTGAGGCTAGGAGTAGAATAGGGGGTCGTGTTTATACAGACCACTCATCTCTTTCAGTTCCTGTGGATCTTGGAGCTAGCATCATTACAGGTGTTGAGGCTGATGTAGATACTGAAAGAAGGCCAGATCCTTCCTCATTAGTTTGTGCTCAGTTGGGACTTGAGTTAACTGTCTTGAACAGTGACTGCCCACTGTATGATATTAATTTGGATAAGCCTTCCCTTGATTCTGAAAAAATTATTGTTGATAGAAAAATGCTTGAGAGGAATAGTTCTAAAGAGGAGGTTTTGAGTCCTATTGAGAGGAGAGTTATGGATTGGCATTTTGCTCACTTAGAGTATGGTTGTGCTGCGAGAAGGGCTTCACATCCTTTTGAACCAGGTGGTTACGGATGTATCATATAG 2316 43.52 MDDEEKKSGSKRRLKHIEIGFDSDDDEPIGSIFKLRRQTNPKKVKLGLDSGGKTGEKLKSVEARAEKLVGEDEELGGMDDTLASFRKKLRGPKKDTGSGTAVVRGSNLNVVELKDVEEGRGIRDYGSDVTMDKGLEKKLKRKSKRSKIVSTKKKTGDSVCQRSEGSSLQDQKEMGLWLEKGTSSDSDGPNQIPFTSIEEPDCASVDLEKEEDALIPDAGLSSIAPTSAGVHESGFASQMDCPEKSVETDHLDESFPLIQKCDSDFHQNQPSHDASRGDHVPIHDYLSASEEANGASSPSITPDKNDAYPEDAGSMPDPEIQDNKSSSAQRTLRKPKKHRQRDMAYEGDADWEILIHEQSFPQSHLVEDTDQPLRTRGKFDSSLNMVSGTDNGGAAAVSVGLKARAVGPVEKIKFKEVLKRKGGLQEYLECRNLILGLWGKDMSRILPLADCGVADTPSKDEPPRASLIREIYVFLDHRGYINVGIASEKEKADPDSKHNYKLLKEKTFGEKSGIAIADSEDGVSTLEPSTLVEPKECLADDYQEHGCMDANEFNRKVNLDVSESSCRIDDSGTIPTIAPELMNESCGVESASMDSAKRDHNVQFDSDVRKKIIVVGAGPAGLTAARHLQRHGFSVIVLEARSRIGGRVYTDHSSLSVPVDLGASIITGVEADVDTERRPDPSSLVCAQLGLELTVLNSDCPLYDINLDKPSLDSEKIIVDRKMLERNSSKEEVLSPIERRVMDWHFAHLEYGCAARRASHPFEPGGYGCII* 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11641451 11647885 - Vvi18g1052 Vvi18g1052 780755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1052 771 SUPERFAMILY FAD/NAD(P)-binding domain 609 709 IPR036188 -
Vvi18g1052 771 SUPERFAMILY Homeodomain-like 394 488 IPR009057 -
Vvi18g1052 771 Gene3D - 392 496 IPR036388 -
Vvi18g1052 771 PRINTS Adrenodoxin reductase family signature 611 633 - -
Vvi18g1052 771 PRINTS Adrenodoxin reductase family signature 634 647 - -
Vvi18g1052 771 MobiDBLite consensus disorder prediction 266 285 - -
Vvi18g1052 771 MobiDBLite consensus disorder prediction 153 170 - -
Vvi18g1052 771 PANTHER FLAVIN MONOAMINE OXIDASE 322 756 - -
Vvi18g1052 771 MobiDBLite consensus disorder prediction 231 343 - -
Vvi18g1052 771 MobiDBLite consensus disorder prediction 243 259 - -
Vvi18g1052 771 Gene3D - 581 678 IPR036188 -
Vvi18g1052 771 Pfam Flavin containing amine oxidoreductase 620 705 IPR002937 GO:0016491
Vvi18g1052 771 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 322 756 - -
Vvi18g1052 771 Pfam SWIRM domain 403 482 IPR007526 GO:0005515
Vvi18g1052 771 MobiDBLite consensus disorder prediction 139 173 - -
Vvi18g1052 771 ProSiteProfiles SWIRM domain profile. 392 492 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1052 - - - vvi:100255769 1039.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069022 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14261 PF01593 Amino_oxidase 3.50E-19 CL0063 Vvi TR