Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g106 ATGGAGCAGAAAAAGTCAGTGGAGTCAATGGAGGGCATGATCCGATGCTCTGCAAACCATGTTCCTTTGTCACCCATAAGCTTCTTGGAAAGATCCGCGAGTGTGTATAGGGACAGAGTGGCCATTGTGTATGGCCGCGTCAAATTCACCTGGAGAGACACCCTTGAAAGATGTACCAGACTTGCTTCTGCTATCACCCACTTGGGGATTTCTCGTGGCGATGTTGTTGCTGCATTGGCCCCAAATATTCCAGCAATGTATGAGCTACATTTTGGGGTTCCAATGGCCGGGGCTGTTCTTTGTACCTTAAATATACGTCATGATTCGGCAATGGTGTCAACATTACTGAAACATTCGGAGGCCAAAATGATTTTTGTAGACTATCAACTTCTTGATACTGCTCAGGGAGCACTAGAAATTCTATCCAAGACAAGAACCAAGCTGCCCCAGTATGAGACTCTTATAGCAATGGGGAAAACTGACTTTGATATTAGATGGCCAAACGATGAATGGGATCCCATTGCACTGAATTACACTTCAGGCACAACATCTCGTCCAAAAGGTGTTATTTATAGCCATAGAGCCCAGGGGGGCACCAATGTCTGCCTAAGAAATGTGACCGCAAAGGGAATATTTGACAGTATTTCTCAGCACAGGGTTACCCACATGGGTGGTGCACCTACTGTTTTGAACATGATCATTAATGCTCCGGAGGTCGACATAAAAGACCCTGTTACTATGAAGAGCGTACCACCTGATGCAAAAACCATAGGTGAGGTTATGTTCAGAGGCAACACTGTGATGAATGGATACTTAAAAGATATCAAAGCAACCGAGGAATCTTTTAAAGGTGGGTGGTTTCGTAGTGGGGACTTGGGGGTGAAACATCCTGATGGCTACATAGAGCTAAAGGATCCAATCCTTGAGGCAGCTGTGGTAGGAAGGCCTGATGACCACTGGGGGGAGACACCATGTGCATTTGTGAAGTTGAAGGAAGGCTGTAATGCAAATGCCAATGAGATTATTAAGTTTTGCCGCAATAAGTTGCCCCATTATATGGCTCCTAAAACCGTTGTTTTTTATGATCTGCCAAAGACTTCCACAGGAAAGACGCAGAAATATATTCTCAAGGAGAAAGCCAAGGCCATGGGGAGCCTTTCAAAAAGGAGCTCCTCTAAAATGTTTGTACCGTTGTTTTCTATGATCTGCCAGAGGATTGTCAACTGTCCTCTGTAA 1236 44.9 MEQKKSVESMEGMIRCSANHVPLSPISFLERSASVYRDRVAIVYGRVKFTWRDTLERCTRLASAITHLGISRGDVVAALAPNIPAMYELHFGVPMAGAVLCTLNIRHDSAMVSTLLKHSEAKMIFVDYQLLDTAQGALEILSKTRTKLPQYETLIAMGKTDFDIRWPNDEWDPIALNYTSGTTSRPKGVIYSHRAQGGTNVCLRNVTAKGIFDSISQHRVTHMGGAPTVLNMIINAPEVDIKDPVTMKSVPPDAKTIGEVMFRGNTVMNGYLKDIKATEESFKGGWFRSGDLGVKHPDGYIELKDPILEAAVVGRPDDHWGETPCAFVKLKEGCNANANEIIKFCRNKLPHYMAPKTVVFYDLPKTSTGKTQKYILKEKAKAMGSLSKRSSSKMFVPLFSMICQRIVNCPL* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 993190 996439 - Vvi18g106 Vvi18g106 779809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g106 411 Gene3D - 18 195 IPR042099 -
Vvi18g106 411 PANTHER ACETATE/BUTYRATE--COA LIGASE AAE7, PEROXISOMAL 307 388 - -
Vvi18g106 411 PANTHER ACETATE/BUTYRATE--COA LIGASE AAE7, PEROXISOMAL 195 238 - -
Vvi18g106 411 PANTHER ACETATE/BUTYRATE--COA LIGASE AAE7, PEROXISOMAL 238 305 - -
Vvi18g106 411 PANTHER ACETATE/BUTYRATE--COA LIGASE AAE7, PEROXISOMAL 11 195 - -
Vvi18g106 411 ProSitePatterns Putative AMP-binding domain signature. 176 187 IPR020845 -
Vvi18g106 411 Gene3D - 302 391 IPR045851 -
Vvi18g106 411 Pfam AMP-binding enzyme C-terminal domain 306 370 IPR025110 -
Vvi18g106 411 Gene3D - 196 245 IPR042099 -
Vvi18g106 411 Gene3D - 246 301 IPR042099 -
Vvi18g106 411 SUPERFAMILY Acetyl-CoA synthetase-like 14 381 - -
Vvi18g106 411 Pfam AMP-binding enzyme 237 305 IPR000873 -
Vvi18g106 411 Pfam AMP-binding enzyme 29 195 IPR000873 -
Vvi18g106 411 PANTHER ACYL-ACTIVATING ENZYME 238 305 - -
Vvi18g106 411 PANTHER ACYL-ACTIVATING ENZYME 11 195 - -
Vvi18g106 411 PANTHER ACYL-ACTIVATING ENZYME 195 238 - -
Vvi18g106 411 PANTHER ACYL-ACTIVATING ENZYME 307 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g106 - - - aof:109826178 507.679
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g106 Blo01g01631 . . Bda03g00315 Bpe02g00313 Bpe04g00277 Bma04g00284 Bma01g02405 Cmo04g02558 . Cma01g02009 Cma09g00061 . . . . . . . . . . . . . . . . . . . Cone4ag2014 Cone7ag1930 . . Lsi04g01800 Csa04g02694 . . . . . . . . . . . . . . . . . . Cpe02g00040 . . . . . . . . . . . . . . . . Chy07g00385 Cme07g00062
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000842 5 8 4 3 3 1 3 2 1 3 2 2 2 3 3 1 1 2 2 2 3 3 3 3 3 3 4 5 3 3 86