Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1060 ATGGATGAGGGTGGGCATCGTGAAAATGGAAGACACAAAGCAGACCCATATAAAGCAGTTCATAGTCAGTGGTTGATGCAACATCAGCCAACAATGAAACAGATAATGGCTATCATGGCTGAAAGGGATACTGCTGTTCAAGAAAGAAATTTGGCTCTTTCTGAGAAAAAGGCAGCAGTAGCTGAGCGTGATATGGCTTTCCTGCAGCGAGATACAGCAATTGCAGAGCGGAACAATGCCATTATGGAACGAGACAATGCCATTGCAACTCTTCAATATCGCGAGAACTCATTGAATGCCACACTTACATCATCCAACCCATCTGAGTGA 330 44.24 MDEGGHRENGRHKADPYKAVHSQWLMQHQPTMKQIMAIMAERDTAVQERNLALSEKKAAVAERDMAFLQRDTAIAERNNAIMERDNAIATLQYRENSLNATLTSSNPSE* 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11741874 11742625 + Vvi18g1060 Vvi18g1060 780763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1060 109 PANTHER - 1 107 IPR010409 -
Vvi18g1060 109 Coils Coil 51 71 - -
Vvi18g1060 109 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 107 - -
Vvi18g1060 109 Pfam GAGA binding protein-like family 1 97 IPR010409 -
Vvi18g1060 109 SMART GAGA_bind_2 1 109 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1060 - - - vvi:100233070 199.904
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g55 Vvi18g1060 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1060 . . . . . . . . Cmo05g00298 Cmo12g00369 . . . Car12g00396 . . Cpe07g00376 Bhi04g00239 . . . . . . . . . . . . . . . . . . . . . Blo17g00751 . Bda08g01227 Bda01g01528 Bpe02g01724 Bpe05g00134 . . . . . . Cma05g00293 Car05g00242 . Cpe11g00243 . . . . . . . . . . . . . . . . Csa02g02118 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069026 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14263 PF06217 GAGA_bind 7.80E-18 No_clan Vvi TF