Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1062 ATGGGAAATGAGAAACTTGCTGAGATCGCATTAGTAGACCCCAAGCGTGCCAAAAGAATTCTGGCTAATCGTCAGTCAGCTGCTCGTTCCAAGGAGAGGAAGGTGCGATACATGGCAGAATTGGAACACAAGGTGCACACTCTACAAACAGAGACAACTACGTTATCTCACCTGCTTACTCTCCTACAGAGAGATTCTGCCGAGCTCACTAGTCGGAACAATGAATTGAAACTCCGAATTCAGGCCATGGAACAAGAGGCACAGTTCAGGGATGCTTTGAAGGAGGCATTAACCCTGGAAGTCCATCGTCTACAGCTTCTCGGAACTGCAGAGCCTAGTGGTGGGAAGGTGTTCTTCTCTTCCCTTTGTTTTGTCAGAGACTCTGGACCCAATTAA 396 47.73 MGNEKLAEIALVDPKRAKRILANRQSAARSKERKVRYMAELEHKVHTLQTETTTLSHLLTLLQRDSAELTSRNNELKLRIQAMEQEAQFRDALKEALTLEVHRLQLLGTAEPSGGKVFFSSLCFVRDSGPN* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11745490 11746340 - Vvi18g1062 Vvi18g1062 780765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1062 131 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 112 - -
Vvi18g1062 131 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 13 76 IPR004827 GO:0003700|GO:0006355
Vvi18g1062 131 SMART brlzneu 11 75 IPR004827 GO:0003700|GO:0006355
Vvi18g1062 131 CDD bZIP_plant_RF2 16 49 IPR044759 GO:0003700|GO:0006355
Vvi18g1062 131 Pfam bZIP transcription factor 15 73 IPR004827 GO:0003700|GO:0006355
Vvi18g1062 131 Gene3D - 15 66 - -
Vvi18g1062 131 Coils Coil 59 86 - -
Vvi18g1062 131 SUPERFAMILY Leucine zipper domain 15 66 IPR046347 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1062 - - - vvi:100264275 235.343
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g57 Vvi18g1062 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1062 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1388 Cone20ag0093 . . . . Blo17g00749 . Bda08g01226 . . . . Bma05g00160 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000658 3 3 2 3 3 1 5 3 2 3 2 2 4 3 3 5 2 5 5 3 3 3 3 3 3 3 3 9 3 3 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14265 PF00170 bZIP_1 5.40E-10 CL0018 Vvi TF