Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1063 ATGGCTGCAGCGGTGGAATCGGAGAATAAGGTTGAAGAAAAGAAGTCGGAGAAGGGGGGAGAGCTGTTGTTATGTGGGTCAACGTGTTGGGATGCAATCGGGCGGCGCAAAGGCACTTTGGAGGGCAATTTGGTGTCTCCCACTCGCCTGCGACCGCTCGTTGGCGTCGACATCAGGTTTGTCGCCGCTGGTTGTGCTTCCTGTCATTGTGTGGCATTGGATGTTGAAGGTCGGTGCTATACCTGGGGCCGCAATGAGAGGGGGCAGCTAGGTCATGGTGACAAGCTTCAGCGCGATAGGCCGACTTTTGTATCTGAACTCTCAAAGTATAAAATCATTAGGGCTGGATCTGGAAGGAGCCATTCGGTGGTAGTTTCTGAAGATGGACAATCTCTTGCCTTTGGCTGGAACAAACATGGGCAGCTGGGTTCAGGTTCAGTAAAAAATGAAGTTGAGCTATCACCTGTTCGCTGTCTTGTCTCTGAAGTAAAAACCGTTGCTTGTGGAGCTGAATTTACTGTGTGGTTATCTTCTGCTGAAGGAGCTTCTATACTAACTGCAGGTCTTCCACAGTATGGTCAACTTGGACATGGGACAGACAATGAGTACAATAGTAAAGATAGCTCAGTGAGGCTTGCTTACGAACCGCAACCACGCCCCAAAGCAATAGCTTCTCTTTCTGGGGAAACCATTGTGAAAGTTGCATGTGGAACAAACCATACAGTGGCGGTGGATTCAAGTGGCCATGTTTACACGTGGGGATTTGGTGGCTATGGAAGGCTTGGACATAGAGAGCAGAAGGATGAGTGGGTTCCTCGTCGTGTTGAGGTCTTTCAAAGGCAGAATGTTCTACCTCCTGAAGCAGTGATTTCAGCTGGTTCTGTTAATTCCTCATGTACTGCTGGTGGAGGGCAGTTGTACATGTGGGGCAAAATAAAGATTACAGGTGATGACTGGATGTATCCTAAGCCTCTTATGGATTTAAGTGGTTGGCATCTAAATTGCATGGATTCAGGCAATATGCACCATTTTGTTGGTGCTGATTCCTCCTGCATCAGTTGGGGCCATGCCCAGTATGGAGAATTGGGATATGGCCCTAATGGCCAGAAGTCTTCTGCAGTTCCAAAAAAGGTAGATATCCTTGAGGGCATGCATGTTATCACTGTTGCGTGTGGGTTTGGGAATTCGATGGTGGTTGTTGATAGGACTAATGTTGGTGATCGACTTGATCAGCTTGATATTTATGACGGGAAAGCTGCTGGTGAAGGGAGCGAGGAACCTGAAAGCCTGAATGCAGTTCCTAAGAAAACTACAAAGAAAGGTGCTGCTGCTGCTAAAGCTTCTGAGAACTCCAAGAAGAGGAAGAAGTCAAAAGAATCATCAGACTCTGAAAGCGAGGAGGATTATGAGGATAATGACAGTGATGATAGTGAAGTAGAGGTCAATGGGGAGGCAGAGAAGAAAAGGCAACGGGGTGGAAAGGCTTCTGGCAGAGGCCGGGGCAAAGGTGCTAAGAAACCTGCAACAGGGAAAAAAGACTCTGGGCGCGGGCGAGGCCGCCCTCTTGCTGTTGAGAAAACCTTGCAGCATTCTCAGGGGAAAGGGAAAAGAGGAAGGCCGAGGAAGTGA 1629 48.56 MAAAVESENKVEEKKSEKGGELLLCGSTCWDAIGRRKGTLEGNLVSPTRLRPLVGVDIRFVAAGCASCHCVALDVEGRCYTWGRNERGQLGHGDKLQRDRPTFVSELSKYKIIRAGSGRSHSVVVSEDGQSLAFGWNKHGQLGSGSVKNEVELSPVRCLVSEVKTVACGAEFTVWLSSAEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLAYEPQPRPKAIASLSGETIVKVACGTNHTVAVDSSGHVYTWGFGGYGRLGHREQKDEWVPRRVEVFQRQNVLPPEAVISAGSVNSSCTAGGGQLYMWGKIKITGDDWMYPKPLMDLSGWHLNCMDSGNMHHFVGADSSCISWGHAQYGELGYGPNGQKSSAVPKKVDILEGMHVITVACGFGNSMVVVDRTNVGDRLDQLDIYDGKAAGEGSEEPESLNAVPKKTTKKGAAAAKASENSKKRKKSKESSDSESEEDYEDNDSDDSEVEVNGEAEKKRQRGGKASGRGRGKGAKKPATGKKDSGRGRGRPLAVEKTLQHSQGKGKRGRPRK* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11749842 11761172 + Vvi18g1063 Vvi18g1063 780766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1063 542 PANTHER PROTEIN RCC2 6 527 IPR028641 -
Vvi18g1063 542 SUPERFAMILY RCC1/BLIP-II 19 402 IPR009091 -
Vvi18g1063 542 Gene3D - 215 406 IPR009091 -
Vvi18g1063 542 Pfam Regulator of chromosome condensation (RCC1) repeat 247 285 IPR000408 -
Vvi18g1063 542 Pfam Regulator of chromosome condensation (RCC1) repeat 353 398 IPR000408 -
Vvi18g1063 542 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Vvi18g1063 542 Pfam Regulator of chromosome condensation (RCC1) repeat 185 244 IPR000408 -
Vvi18g1063 542 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Vvi18g1063 542 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Vvi18g1063 542 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Vvi18g1063 542 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Vvi18g1063 542 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Vvi18g1063 542 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Vvi18g1063 542 MobiDBLite consensus disorder prediction 418 542 - -
Vvi18g1063 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Vvi18g1063 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Vvi18g1063 542 Gene3D - 6 214 IPR009091 -
Vvi18g1063 542 MobiDBLite consensus disorder prediction 506 520 - -
Vvi18g1063 542 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Vvi18g1063 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Vvi18g1063 542 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Vvi18g1063 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Vvi18g1063 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Vvi18g1063 542 MobiDBLite consensus disorder prediction 446 463 - -
Vvi18g1063 542 MobiDBLite consensus disorder prediction 464 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1063 - - - vvi:100245560 945.266
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1063 . . Bda01g00500 . Bpe02g00362 . . Bma01g02357 . . Cma01g01953 . Car01g01525 . . . . . . . . . . . . . . . . . . . . Cone17ag1389 Cone20ag0092 Lsi04g01721 Csa03g04257 Chy04g00438 . . . . . . . . . . Cmo01g02012 . . . . . . Cpe02g00088 Bhi09g02117 Tan01g4990 . . Hepe01g1636 Mch11g0139 . . . . . . . . . . . Cme04g00492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010513 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 32