Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1064 ATGGATAACTCAACCCCTCATGTCTACCTATGGCAGCTCTCTAAGCAATATGGACCCATCTTGTCCTTGGGCCTCGGCTTGGTGCCTACCCTGGTGGATTCTTTGGCCAAAATGGCAAAAGAGCTCTTGAAAGCACATGATCTTGAATTTTCTAGTAGGTCTTCCTCGCTTGGCCAGCAAAGCTATCCTACAATGGCTTGGATTTGGATTTTTGCACCGTATGATGGGTACTGGAGGGAGATGAGAAAGATTTGTGTCCTCCATCCTTTCAGCTCCAAAAGGGTACAATCCTTTCGTTCCATTCGGGAAGATGAGGTTTCCCGAATTATTGAAAAAATTTCCAAGTCTGCTTCTGCGGCCAAACTCACCGACTTGAGTGAGACAGTGATGTTGCTCACCAGCAATATAATCTGTAGGACCGCTTTTGGTAAGAGGTACGAGGATAAAGGGTATGACAGAAGTAGGTTTCATGGGCTACTAAATGACGCTCAGGCAATGATGGGCAGCTTCTTTTTCACGGACCATTTTCCGTCTATGGGACCAAAACAAGAGCAAGAGGACATCGCTGTCGTTTTGCTTAGATTACAGAGGGAGAGGTTATTTTCAGTGGATCTCACTTGGGATCACATCAAGGCAGTGCTCATGGACGTATTTGTGGCGGGAACAGATCCAGGTGCAGCCACCTTGGTCTGGGCTATGGCAGAAGTGACGAAAAATCCTGGAGGGAAGAAGAAAGCCCAAGAAGAACTGAGAACTGTGTTTGGAAGGAAAGGTTTTGTAGATGAAGATGATCTTCATAAACTGCCTTATCTCAAGGCGTTGGTGAAGGAGACGCTGAGAGTGCACCCTCCAGCTCCATTGCTACTCACAAAGGAGACACTAGAAAACTGCACCATAGACGCTTATGACATACCACCCAAGACCCTGGTATTTGTGAATGCATGGGCCATTGGAAGAGATCCTGAAGCCTGGGAAAACCCAGAAGAGATCTTGCCTGAAAGATTCTTGAGTAGCTCTGTTGACTTCAAAGGACAGGATTATGAACTGATATCTTTCAGCGTTGGCCGGCGAGGTTGTCCGGGGATTCATCTTGGAGTTGTGACAGTGGAGCTTGCACTAGCTAATCTTCTTTACTCATTTGACTGA 1146 46.6 MDNSTPHVYLWQLSKQYGPILSLGLGLVPTLVDSLAKMAKELLKAHDLEFSSRSSSLGQQSYPTMAWIWIFAPYDGYWREMRKICVLHPFSSKRVQSFRSIREDEVSRIIEKISKSASAAKLTDLSETVMLLTSNIICRTAFGKRYEDKGYDRSRFHGLLNDAQAMMGSFFFTDHFPSMGPKQEQEDIAVVLLRLQRERLFSVDLTWDHIKAVLMDVFVAGTDPGAATLVWAMAEVTKNPGGKKKAQEELRTVFGRKGFVDEDDLHKLPYLKALVKETLRVHPPAPLLLTKETLENCTIDAYDIPPKTLVFVNAWAIGRDPEAWENPEEILPERFLSSSVDFKGQDYELISFSVGRRGCPGIHLGVVTVELALANLLYSFD* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11761769 11763902 - Vvi18g1064 Vvi18g1064 780767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1064 381 Gene3D Cytochrome P450 1 178 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS E-class P450 group I signature 14 33 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS E-class P450 group I signature 38 59 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS E-class P450 group I signature 209 226 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS E-class P450 group I signature 229 255 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS E-class P450 group I signature 272 290 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS E-class P450 group I signature 313 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS E-class P450 group I signature 349 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS E-class P450 group I signature 359 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PANTHER CYTOCHROME P450 71B11-RELATED 182 381 - -
Vvi18g1064 381 PANTHER CYTOCHROME P450 71B11-RELATED 2 180 - -
Vvi18g1064 381 SUPERFAMILY Cytochrome P450 4 381 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 352 361 IPR017972 GO:0005506|GO:0016705
Vvi18g1064 381 Gene3D Cytochrome P450 179 381 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS P450 superfamily signature 220 237 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS P450 superfamily signature 273 284 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PRINTS P450 superfamily signature 350 359 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 Pfam Cytochrome P450 185 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 Pfam Cytochrome P450 5 177 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1064 381 PANTHER CYTOCHROME P450 83B1 182 381 - -
Vvi18g1064 381 PANTHER CYTOCHROME P450 83B1 2 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1064 - - - vvi:100245351 526.554
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1064 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5