Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1065 ATGCCCATGATTTTCACTTTTAAATCAATTATACCTTTTTTTTCTCTATTTTACTCTCAGCAGCTCCCCAAACCCCCTCAAACCGTGATGATATTGCATCTTATCCTTTTAGCTCTCCCTCTCTTCCTCTTGTTTCTTGTTCGAAACCACAGAAACAATGGAAGAACGCCCCTTCCACCAGGTCCTCCAGGGCTGCCCTTCATTGGAAACTTGCTCCAGATTAGTAAAACAGCTCCTCATCTCTACCTATGGCAACTTTCTAAACAATACGGCTCCCTCATGTTCTTACGCCTTGGTTTCGTGCCAACCCTAGTTGTTTCTTCTGCAAGAATGGCAAAAGAGGTCATGAAAACACACGATCTTGAATTTTCTGGCAGGCCTTCCATGCTTGGCCTGAAAAATAGATTTCATGAACTCCTAGGTGGAGTTCAGACCATGTCGATGGCCTTCTTTTTCTCGGACCATTTTCCTTTAATGGGCTGGGTCGACAAACTCACAGGCATGATTGCTCGGCTCGAGAAAATTTTCGAGGAATTGGATTTGTTTTGTCAAGAAATCATTGATGAGCACCTGGATCCAAATAGATCAAAGCTTGAGCAAGAAGACATCACTGATGTCTTGCTTAGACTGCAGAAGGATCGTTCATCTACAGTTGATCTCACTTGGGATCACATTAAAGCTATGTTCGTGGACATATTTGTCGCAGGAACAGATACAAGTGCGGCCACAGTGGTTTGGGCGATGACAGAACTAATGAAGAATCCCATAGTGATGAAGAAAGCACAAGAAGAACTCAGAAATTTAATCGGGAAGAAGGGCTTTGTGGATGAAGATGATCTCCAGAAGCTTTCTTATCTCAAAGCACTAGTGAAGGAGACGATGAGATTGCATCCAGCAGCTCCATTGCTGGTCCCGAGAGAAACACTTGAAAAGTGTGTGATAGATGGGTATGAGATAGCACCCAAAACCCTCGTGTTTAAAAATAAGACTTTTGGAATAAATAAATGTTGCTATTAG 1017 42.67 MPMIFTFKSIIPFFSLFYSQQLPKPPQTVMILHLILLALPLFLLFLVRNHRNNGRTPLPPGPPGLPFIGNLLQISKTAPHLYLWQLSKQYGSLMFLRLGFVPTLVVSSARMAKEVMKTHDLEFSGRPSMLGLKNRFHELLGGVQTMSMAFFFSDHFPLMGWVDKLTGMIARLEKIFEELDLFCQEIIDEHLDPNRSKLEQEDITDVLLRLQKDRSSTVDLTWDHIKAMFVDIFVAGTDTSAATVVWAMTELMKNPIVMKKAQEELRNLIGKKGFVDEDDLQKLSYLKALVKETMRLHPAAPLLVPRETLEKCVIDGYEIAPKTLVFKNKTFGINKCCY* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11764400 11773531 - Vvi18g1065 Vvi18g1065 780768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1065 338 PANTHER CYTOCHROME P450 71B11-RELATED 36 133 - -
Vvi18g1065 338 PANTHER CYTOCHROME P450 71B11-RELATED 133 329 - -
Vvi18g1065 338 Gene3D Cytochrome P450 135 328 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 Pfam Cytochrome P450 143 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 Pfam Cytochrome P450 59 134 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 Gene3D Cytochrome P450 48 134 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 PRINTS E-class P450 group I signature 224 241 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 PRINTS E-class P450 group I signature 244 270 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 PRINTS E-class P450 group I signature 287 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 PANTHER CYTOCHROME P450 83B1 36 133 - -
Vvi18g1065 338 PANTHER CYTOCHROME P450 83B1 133 329 - -
Vvi18g1065 338 PRINTS P450 superfamily signature 235 252 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 PRINTS P450 superfamily signature 288 299 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1065 338 SUPERFAMILY Cytochrome P450 59 328 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1065 - - - vvi:100250687 387.882
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1065 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019243 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5