Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g107 ATGTGCCGGTCTGTTTGGCTCGGTGTTGTAACCTTGTTTATAGCCGGCATAACTCACTGGGTTTACAAATGGAGGAATCCCAAATGTAATGGCAAACTCCCTCCGGGTTCCATGGGATTGCCACTCATTGGAGAGACCATCCAGTTTTTCATCCCAAGCAAGTCCTTGGACGTTCCGAACTTCATCAAGAAGAGGATGAAAAAATACGGTCCATTGTTCTGTACAAACTTGGTAGGACGACCGGTGGTGGTGTCATCGGACCCAGACTTCAACTACTATATATTCCAACAAGAAGGGAAGTTGGTGGAGTTTTGGTACTTGGACTCCTTTGCAAAGCTTGTGGGTCTGGATCCTTCATCTAATGCTGCGACTGGTTATGTTCACAAGTATGCTAGGAACTTGATCTTGGCTTATTTGGGTACGGAGGTCCTGAAGGACAAACTTCTTTCCAAGGCTGAAGATCTGATACGTACAAGGCTGCATGATTGGTCCAAGTTGCCTGCCTTTGAAATCAAAGCATGCCTTTCGTCGATGGTATTTGATTTGACTGGGATGGAGGTACTTAGTGATGACTTTAAGAAGATGGGAGCACATTTTATTGAAAAATTTGCCAATATCTTACAAGCTCTTTTTTCATTTCCTTTGAATATCCCGGGTACTTCTTTCCATGAGTGCCTAAAGAATCAAAAGGAGGCAAAAAGGTTGATCCGTGATCTACTGATAGAGAGAAAAGTTACGTTAGAAAGTTGTAAAGGAGATCTTCTTGATAAGTTGGTTGACGATGCGAAGAAAGAAAAGTTCTTATCAGATGACTATATCGTTATCTTTGTGTTTGGGATTTTACTTGCTAGTTTTGAGACAATTTCCACTGCCACAACGTTAGCTCTGAAGTTCCTCACTGAACATCCTTTGGCAATGCAAGAGCTAATTGAGGAGCATGAGGCAATCCTCAAAAATAAGGAAAATCCAAATTCTGGAATTTCATGGAAGGAATATAAGTCAATGACTTTTACTCATCAAGTTATCAATGAAACTCTTCGATTAGCAAATATTGTTCCAGGGATTTTGAGAAGGGCAATAAAAGACATTCAAGTAAATGGATATACAATTCCAGCAGGCTGGATAATCCTGCTTTATCCTGCAGCTCTTCAACTAGACCCTAATACTTTTGCTGATCCCCTTACTTTCAATCCATGGCGATGGAAGGATATCGGAGCTGGTGTTAGGGCAAAGAATTTCATGCCATTCGGATGTAGCTCAAGATCATGCGCAGGAGCAGAGTTCACCAAGGTTTTAATGGCAACCTTTCTCCATGTCTTGGTCACTAATTATAGGTTGACAAAGATCAAAGGAGGAAAGATAGCTCGGTCTCCCAGTTTGATATTTGAAAATGGTTTCCACATCAACATTTCGAAAAAGCATGGATGTTGA 1431 41.3 MCRSVWLGVVTLFIAGITHWVYKWRNPKCNGKLPPGSMGLPLIGETIQFFIPSKSLDVPNFIKKRMKKYGPLFCTNLVGRPVVVSSDPDFNYYIFQQEGKLVEFWYLDSFAKLVGLDPSSNAATGYVHKYARNLILAYLGTEVLKDKLLSKAEDLIRTRLHDWSKLPAFEIKACLSSMVFDLTGMEVLSDDFKKMGAHFIEKFANILQALFSFPLNIPGTSFHECLKNQKEAKRLIRDLLIERKVTLESCKGDLLDKLVDDAKKEKFLSDDYIVIFVFGILLASFETISTATTLALKFLTEHPLAMQELIEEHEAILKNKENPNSGISWKEYKSMTFTHQVINETLRLANIVPGILRRAIKDIQVNGYTIPAGWIILLYPAALQLDPNTFADPLTFNPWRWKDIGAGVRAKNFMPFGCSSRSCAGAEFTKVLMATFLHVLVTNYRLTKIKGGKIARSPSLIFENGFHINISKKHGC* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1007919 1011012 + Vvi18g107 Vvi18g107 779810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g107 476 Pfam Cytochrome P450 34 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g107 476 PANTHER CYTOCHROME P450 26 10 465 - -
Vvi18g107 476 PANTHER CYTOCHROME P450 87A3-LIKE 10 465 - -
Vvi18g107 476 Gene3D Cytochrome P450 25 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g107 476 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g107 476 PRINTS E-class P450 group I signature 272 289 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g107 476 PRINTS E-class P450 group I signature 292 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g107 476 PRINTS E-class P450 group I signature 339 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g107 476 PRINTS E-class P450 group I signature 379 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g107 476 PRINTS E-class P450 group I signature 413 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g107 476 PRINTS E-class P450 group I signature 423 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g107 476 SUPERFAMILY Cytochrome P450 30 453 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g107 - - - vvi:100246174 963.755
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1176 Vvi18g107 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g02351 . Cpe01g02112 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001690 4 2 3 4 3 2 2 2 3 2 3 2 2 2 2 1 2 2 2 3 1 2 2 2 2 1 0 2 2 8 70