Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1072 ATGAGCTCGACCTCGCTGAGTTGCATTTGTGGCGTTGGTCGGAAATCGCGCAAGGGTTATAGTGATAAACGTGGGTGGAGTTTCCGGAAGAGATCTGCCAGGCATCGAGTTCTAAGCAACACTGTGGTTTCAGAAATTCCTTCTTCTGGGAATAAGGAGAGCCCAGAATCTGCGGCTATTAACTTTCAAACACCAGTTGACTCTACCATACCCGAGAAAACTTCTGTTCCGCAATGGGCAGATGAGAAACCCCAGTTATCGACTTCATTTAACTCAAAAGCATCCGAGACTGTTGTTGCTTCAGAGAATGAAAGTAAGGTTGATGTCAATGTGGATGAGTCTGCTGCTATTGCAATTCAGGCCGCTGTCAGAGGATTCTTGGCTCAAAGAGCACTCCTAAAGCTTAAGAATGTAATCAAGTTGCAAGCTGCTGTCCGGGGGCATTTGGTTCGGAGGCATGCTGTGGGAACCCTACGTGTAGTTCAGGCCATTGTTAAAATCCAAGCTCTTGTTCGTGCTCGCCGAGTTCAAGCAGGGAAGTTAGATGATCGGAAAGATAAACCTAGTTCCAAGCCCATGGAAAAGGAAAATTCATCAGCTGACCCATCTGCAACATACACTTCTATTGACAAGCTTCTTAGCAATGGCTTTGCCCGTCAGCTACTGGAATCAAATCCAAGAACCAAGTCTATCCACATTAAATGTGATCCTTCAAGACCTAATTCTGGATGGCAATGGTTGGAGAGGTGGATGTCTGTCTCATCATCAAATCTTGGACAACCACAGATACCAGTGTTGGAGAAAGAGGAACTGGAACATGAGAGATCTGAAATGGAAAGTGAACAACCCAAACGTTCTGTTAAAAGGTTTGCCTCTGAACAACTGGAGACTGAAGGGAAGAAGTTTGTATTTGGATCGAGGAAGGTGAGTAATCCTGCATTTGTTGCTGCCCAGTCAAAATTTGAAGAGCTGAGTTCTACAGCCAATTCAGGTAGATTAATCAGTCCTTCCCATCAAGATGTTGGAGTTGAATCAAACATCGAGACAGTTTCATCTGCAGCTGATACCTCAATCACGACAAAGGATCTTAACAGCGAAGATAATTCAATTCCACCTAATTCAAGGCTTCAAGTTGGTGGCTCTGAATGTGGCACTGAACTTTCTATTACTTCTACTCTTGATTCACCTGATATATCCGAAGTTGGAGCCATGGAATTTGACAATGAAGCCAAAGTCTCAGAAGAAGTGATTTGCAATCTCAACAGCACTGGAGGCCTTGATGTTGAATCCAAGGATGTGTCCACCATCGCAGTGTCTAATTTATCTGACACTATGTTGGCTCCACCAGAGAAACGTGATGCTGTTAATGGTGAACCTGTTAATTCAGTTGTAGATAACTGGACCCTCAGACAGGCCGTCAAGCATACAGGTCATCACCAGAAGCTTCTCCAAGGAGCCACATCACTGTTCCCGAGTCCCAAGGAACACCTTCCAGCCAGGTATCAGTGA 1509 44.86 MSSTSLSCICGVGRKSRKGYSDKRGWSFRKRSARHRVLSNTVVSEIPSSGNKESPESAAINFQTPVDSTIPEKTSVPQWADEKPQLSTSFNSKASETVVASENESKVDVNVDESAAIAIQAAVRGFLAQRALLKLKNVIKLQAAVRGHLVRRHAVGTLRVVQAIVKIQALVRARRVQAGKLDDRKDKPSSKPMEKENSSADPSATYTSIDKLLSNGFARQLLESNPRTKSIHIKCDPSRPNSGWQWLERWMSVSSSNLGQPQIPVLEKEELEHERSEMESEQPKRSVKRFASEQLETEGKKFVFGSRKVSNPAFVAAQSKFEELSSTANSGRLISPSHQDVGVESNIETVSSAADTSITTKDLNSEDNSIPPNSRLQVGGSECGTELSITSTLDSPDISEVGAMEFDNEAKVSEEVICNLNSTGGLDVESKDVSTIAVSNLSDTMLAPPEKRDAVNGEPVNSVVDNWTLRQAVKHTGHHQKLLQGATSLFPSPKEHLPARYQ* 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11862550 11869310 + Vvi18g1072 Vvi18g1072 780775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1072 502 Gene3D - 112 160 - -
Vvi18g1072 502 PANTHER PROTEIN IQ-DOMAIN 32 273 425 - -
Vvi18g1072 502 PANTHER PROTEIN IQ-DOMAIN 32 17 263 - -
Vvi18g1072 502 MobiDBLite consensus disorder prediction 178 205 - -
Vvi18g1072 502 MobiDBLite consensus disorder prediction 178 194 - -
Vvi18g1072 502 ProSiteProfiles IQ motif profile. 134 163 IPR000048 GO:0005515
Vvi18g1072 502 MobiDBLite consensus disorder prediction 361 381 - -
Vvi18g1072 502 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Vvi18g1072 502 PANTHER IQ-DOMAIN 5-RELATED 273 425 - -
Vvi18g1072 502 PANTHER IQ-DOMAIN 5-RELATED 17 263 - -
Vvi18g1072 502 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Vvi18g1072 502 Pfam IQ calmodulin-binding motif 136 153 IPR000048 GO:0005515
Vvi18g1072 502 SMART iq_5 111 133 IPR000048 GO:0005515
Vvi18g1072 502 SMART iq_5 134 155 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1072 - - - vvi:100259212 501.516
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1072 Blo01g01588 Blo12g00893 Bda01g00499 Bda03g00278 Bpe02g00361 Bpe04g00234 Bma04g00236 . Cmo05g00299 Cmo12g00368 Cma01g01954 . Car01g01526 Car12g00395 . . Cpe07g00375 Bhi04g00241 . . . Hepe10g0136 . . . . . . . . . Cone4ag1957 Cone7ag1870 Cone17ag1390 Cone20ag0091 Lsi04g01722 Csa03g04258 Chy04g00437 Cme03g01895 . . . . . . . . Sed11g1080 Cmo01g02013 . Cma12g00418 Cma05g00294 Car05g00243 . Cpe11g00244 Cpe02g00087 Bhi09g02116 Tan01g4991 Cmetu03g0968 . Hepe01g1635 Mch11g0138 . Cla05g01894 Cam05g2029 Cec05g2038 Cco05g2095 Clacu05g2020 Cmu05g1900 Cre05g2024 Lsi08g01337 Csa02g02119 Chy03g01398 Cme04g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002353 2 2 0 1 2 2 3 2 2 2 1 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 1 4 3 1 62