Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1078 ATGATGAGCTCTGTTGAGGAGAACATCAAAGCCGGAGGCCTGGTTAGTGGGACACAAACAACTCTAATTGAAGAGATGAAGTTGTTGAAAGAAATGCAGGATCAATCTGGGCCCCGAAAGGCCATAAATTCTGAGCTATGGCATGCCTGTGCCGGCCCACTTGTTTCCTTGCCTCAGGTGGGAAGCCTTGTGTATTACTTCCCTCAAGGACATAGTGAACAGGTGGCAGTTTCAACTAAAAGAACCGCAACCTCGCAAATCCCTAACTATCCAAACCTCCCATCTCAATTAATGTGCCAAGTTCACAATGTTACGCTACATGCAGACAAAGATACAGATGAAATCTATGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATATTTTTCCTATACCAGATTTTGGACTCAAGCCCAGCAAGCATCCAAGTGAGTTTTTCTGCAAAACTTTGACTGCAAGTGATACAAGCACGCATGGTGGCTTCTCAGTGCCCCGCAGAGCAGCAGAAAAGCTCTTCCCACCACTGGATTACTCAATGCAACCTCCAACTCAGGAGCTCATTGTTCGAGATTTGCATGATATTACCTATACATTTCGTCACATATACCGTGGGCAACCAAAGCGGCACCTTTTAACAACTGGTTGGAGTGTGTTTGTTAGTGCAAAAAGACTTAGAGCAGGTGATGCTGTCCTATTTATCAGAGATGAGAAATCACAGCTATTGCTTGGTGTGAGGCGTGCAAACCGTCAGCAAACATCATTGCCATCATCAGTTCTGTCCGCTGATAGCATGCATATTGGAGTTCTTGCAGCTGCAGCTCATGCTGCGGCCAACCGAAGCCCATTTACCATTTTCTACAATCCCAGGCATGCTTTTTTCTTGGCATGCCCATCAGAATTTGTTATTCCTTTGGCCAAGTACCGAAAATCTGTATATGGAACCCAAATTTCTGTTGGTATGAGGTTTGGAATGATGTTTGAGACAGAGGAATCGGGGAAGCGCAGATACATGGGTACGATAGTTGGTATAAGTGACCTAGATCCACTGAGCTGGCCAGGTTCCAAGTGGCGTAATCTTCAGGTTGAGTGGGATGAGTCGGGATGTGGTGATAAGCAGAGCAGGGTTAGTTCATGGGAAATTGAGACTCCTGAAAGCCTTTTCATTTTTCCTTCCCTGACATCAAGTCTCAAACGACCTATGCATGCTGGTTTCTTGGGAGGTGAAGCTGAATGGGGAAGTTTGATGAAAAGGCCATTTATCCGTGTTCTTGAAAATGGGAATGGGGTTCTTCCGTACCCCACAATTCCAAATATATGTTCTGAGCAATTGATGAAGATGCTACTGAAACCTCAACTTGTTAACCCTCCTGGTACTCTTACACCTGCATTCCAAGACTCTGGTGTGAAGGCAGCTTCATTACAAGAGGCAAGAATTATAGAGGGAATGATTAAGCAGCAACCTCCGCCTATTCCTTCAGAAAATAAATTGCTGCAAAATCAAAATCATCCTCAGCCCTGCCTCGATCAACCTGATGCAACAAACTCTGATTTACCATCACAACCAAATCTAGTAGGACAAGTGCAACCTCTGAACAAATTGGAAAATCAAACACCATCTGGAAATGCTGAAAAATCGAACATAGAACCTGTGCATACAGCAGATCAGTTAAGCCAGTTGACCTCTACTGGACAGGGTGATGAGGAAAAGCTAGCTAAGAGCCCTAAGAATCCACAGAACCTTACTAATTCTTTCATGCAACCCCATTTGGAATCCTCAATTTTCCATGCCCAGCAAATTTCTGCACCCCCATTTGATTCTAATCCAAATGCCTTATCTCCATACATAGACACCGATGAATGGATTTTGTACCCTTCTGCAAACCAATCTTTTGGTGGGGTTCTGAGATCACCTGGGCCTTTATCTACATTTAGTCTGCAAGATCCTTCGGTGGTGTTTCCAGAAGCAATTAACCCAACTCTTCCTTCAATGGGTCAGGAAATATGGGATCATCAACTGAACAATGCAAAATACTTGTCAGATGATAGCAATAACCAAAGTGGGATCTACAGTTGTCTTAATTTTGATGTTAGTAATGGTGGAAGTACTGTGGTTGACCCTTCTGTTTCAAGCACCATTTTGGATGAGTTCTGTACATTTAAGGATGCTGATTTCCCAGATCCTTCAGATTGTTTAGTAGGCAACTTCAGTACAAGCCAGGATGTTCAGTCCCAGATTACCTCAGTGAGCTTAGCAGACTCTCAGGCCTTCTCTCGTCCAGACTTCCTTGACAACTCAGGTGGTACTTCATCAAGCAATGTGGATTTTGATGAAAGCAGTCTTTTGCAGAATAGCTCTTGGCAACAAGTAGCTCCACCACCAATGCGAACTTATACAAAGGTTCAAAAAATGGGATCAGTTGGGAGGTCAATTGACGTTGCAAGTTTTAAGAATTATGAAGAATTATGCTCAGCAATTGAATGCATGTTTGGACTTGAGGGTCTGCTCAACGACCAGAAAGGCTCAGGCTGGAAATTGGTGTATGTGGATTATGAGAATGATGTACTTCTTGTTGGGGATGATCCCTGGAAGGAGTTTGTTGGCTGTGTCCGCTGCATTAGAATTTTGTCGCCTTCTGAAGTTCAGCAGATGAGTGAAGAGGGCATGCAGCTTCTCAATAGCACAGCAATTGAAGGGATTAATGATTCTATCAGAAGGTGA 2724 43.72 MMSSVEENIKAGGLVSGTQTTLIEEMKLLKEMQDQSGPRKAINSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDIFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSMQPPTQELIVRDLHDITYTFRHIYRGQPKRHLLTTGWSVFVSAKRLRAGDAVLFIRDEKSQLLLGVRRANRQQTSLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRHAFFLACPSEFVIPLAKYRKSVYGTQISVGMRFGMMFETEESGKRRYMGTIVGISDLDPLSWPGSKWRNLQVEWDESGCGDKQSRVSSWEIETPESLFIFPSLTSSLKRPMHAGFLGGEAEWGSLMKRPFIRVLENGNGVLPYPTIPNICSEQLMKMLLKPQLVNPPGTLTPAFQDSGVKAASLQEARIIEGMIKQQPPPIPSENKLLQNQNHPQPCLDQPDATNSDLPSQPNLVGQVQPLNKLENQTPSGNAEKSNIEPVHTADQLSQLTSTGQGDEEKLAKSPKNPQNLTNSFMQPHLESSIFHAQQISAPPFDSNPNALSPYIDTDEWILYPSANQSFGGVLRSPGPLSTFSLQDPSVVFPEAINPTLPSMGQEIWDHQLNNAKYLSDDSNNQSGIYSCLNFDVSNGGSTVVDPSVSSTILDEFCTFKDADFPDPSDCLVGNFSTSQDVQSQITSVSLADSQAFSRPDFLDNSGGTSSSNVDFDESSLLQNSSWQQVAPPPMRTYTKVQKMGSVGRSIDVASFKNYEELCSAIECMFGLEGLLNDQKGSGWKLVYVDYENDVLLVGDDPWKEFVGCVRCIRILSPSEVQQMSEEGMQLLNSTAIEGINDSIRR* 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11920497 11929437 - Vvi18g1078 Vvi18g1078 780781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1078 907 PANTHER AUXIN RESPONSE FACTOR 5 30 900 - -
Vvi18g1078 907 MobiDBLite consensus disorder prediction 487 526 - -
Vvi18g1078 907 Pfam Auxin response factor 274 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi18g1078 907 SUPERFAMILY CAD & PB1 domains 813 876 - -
Vvi18g1078 907 Pfam AUX/IAA family 796 884 IPR033389 -
Vvi18g1078 907 Gene3D - 317 389 - -
Vvi18g1078 907 Gene3D - 146 249 IPR015300 -
Vvi18g1078 907 MobiDBLite consensus disorder prediction 493 526 - -
Vvi18g1078 907 MobiDBLite consensus disorder prediction 561 585 - -
Vvi18g1078 907 CDD B3_DNA 147 248 IPR003340 GO:0003677
Vvi18g1078 907 ProSiteProfiles PB1 domain profile. 797 881 IPR000270 GO:0005515
Vvi18g1078 907 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 900 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi18g1078 907 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Vvi18g1078 907 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Vvi18g1078 907 Gene3D - 794 886 - -
Vvi18g1078 907 SMART B3_2 148 250 IPR003340 GO:0003677
Vvi18g1078 907 SUPERFAMILY DNA-binding pseudobarrel domain 135 277 IPR015300 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14267 PF02309 AUX_IAA 1.80E-10 CL0072 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1078 K14486 - vvi:100254074 1788.08