Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1079 ATGAGAAATGCGGCGAACGTCCGAAGACTGGCCAACCAGTACGCAGCTCAACTGCAACAATGCTGTCCCCACAATCCCATGTCGTATTCTATCGCCCGTACTGTTCATGCCCACATGATAGCTTCTGGGTTCAAGCCACGAGGTTATATCCTCAACCGTCTCATTGATGTCTACTGCAAATCATCTGATCTCGTCTCCGCACACCACCTGTTCGACGAAATTCGTCAACCTGACATCGTCGCTAGAACCACGTTAATTGCCGCCCACTCCTCTGCTGGGAATTCCAATCTAGCACGAGAGATATTTTTTGCGACCCCCTTGGGAATCCGAGACACTGTTTGCTACAATGCTATGATCACGGGCTATTCACATAATAACGATGGTTTTGGAGCCATTGAACTGTTTCGTGACTTGTTGCGGAACGGCTTTAGGCCCGATAATTTCACGTTTACGAGTGTGCTAGGTGCTTTGGCGCTTATAGTTGAAGATGAAAAGCAGTGCCAGCAGATACATTGTGCTGTAGTGAAGTCAGGATCTGGGTTCGTTACTTCGGTTTTAAATGCACTACTATCTGTATTTGTTAAGTGTGCGTCTTCCCCATTAGTGTCATCGTCATCATTGATGGCTGCGGCCAGGAAGTTGTTTGACGAGATGACCGAGAGAGATGAGTTGTCGTGGACAACAATGATAGCCGGATATGTAAGGAATGGTGAACTTGATGCAGCACGTCAGTTTCTTGATGGGATGACAGAAAAATTGGTGGTTGCGTGGAATGCGATGATTTCGGGGTATGTGCATCATGGGTTTTTCCTAGAAGCTCTGGAAATGTTTAGGAAGATGTATTTATTAGGAATTCAGTGGGATGAATTTACATACACAAGTGTACTTAGTGCTTGTGCAAATGCAGGATTTTTTCTGCATGGAAAGCAGGTGCATGCTTACATTCTACGCACTGAACCAAGGCCTTCCCTTGATTTTTCATTGTCTGTAAATAATGCATTGGCAACACTCTATTGGAAATGTGGTAAAGTTGATGAGGCACGGCAGGTTTTTAATCAGATGCCTGTAAAAGACCTTGTTTCATGGAATGCAATCTTATCAGGCTATGCTGCCCACTGTCTTTTCCTAACAATGCCTTATTTGGATTCAGTATCTTGGAATGCCATGATTGCAGCTCTGGGTCAACATGGACATGGTGCTCAAGCACTAGAACTTTTTGAACTGATGTTGAAGGAAGACATATTACCAGATCGGATAACTTTCCTCACAGTTCTTTCCACTTGTAGCCATGCCGGTCTAGTGCAAGCAGTATACAATTATCTCGAAGAACTGGGATTAAAAATGAGGAAATTAGGGTATATCCCTGACACAAAGTTTGTATTGCATGATATGGAATCTGAGCAGAAGGAATATGTTTTGTCTACTCACAGTGAAAAGCTTGCTGTTGGTTTTGGGCTCCTGAAGCTCCCTCTTGGAGCCACAGTTAGGGTTTTCAAGAACCTTAGAATTTGTGGGGATTGTCACAATGCATTCAAGTTTATGTCAAAAGTGGTGGAGAGAGAGATTGTTGTGAGAGATGGTAAGAGATTTCATCATTTCAAGAATGGCGAATGCTCTTGTGGCAATTACTGGTAA 1635 43.73 MRNAANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW* 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11933805 11936199 + Vvi18g1079 Vvi18g1079 780782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1079 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vvi18g1079 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Vvi18g1079 544 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Vvi18g1079 544 TIGRFAM PPR: pentatricopeptide repeat domain 384 417 IPR002885 -
Vvi18g1079 544 TIGRFAM PPR: pentatricopeptide repeat domain 255 288 IPR002885 -
Vvi18g1079 544 TIGRFAM PPR: pentatricopeptide repeat domain 225 251 IPR002885 -
Vvi18g1079 544 PANTHER - 6 370 - -
Vvi18g1079 544 PANTHER - 370 435 - -
Vvi18g1079 544 PANTHER - 434 538 - -
Vvi18g1079 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Vvi18g1079 544 PANTHER BNACNNG04730D PROTEIN 6 370 - -
Vvi18g1079 544 PANTHER BNACNNG04730D PROTEIN 434 538 - -
Vvi18g1079 544 PANTHER BNACNNG04730D PROTEIN 370 435 - -
Vvi18g1079 544 Pfam PPR repeat family 111 158 IPR002885 -
Vvi18g1079 544 Pfam PPR repeat family 254 301 IPR002885 -
Vvi18g1079 544 Pfam PPR repeat family 382 428 IPR002885 -
Vvi18g1079 544 Gene3D Tetratricopeptide repeat domain 180 311 IPR011990 GO:0005515
Vvi18g1079 544 Gene3D Tetratricopeptide repeat domain 2 106 IPR011990 GO:0005515
Vvi18g1079 544 Gene3D Tetratricopeptide repeat domain 312 374 IPR011990 GO:0005515
Vvi18g1079 544 Gene3D Tetratricopeptide repeat domain 107 176 IPR011990 GO:0005515
Vvi18g1079 544 Gene3D Tetratricopeptide repeat domain 375 472 IPR011990 GO:0005515
Vvi18g1079 544 Pfam PPR repeat 332 357 IPR002885 -
Vvi18g1079 544 Pfam PPR repeat 51 75 IPR002885 -
Vvi18g1079 544 Pfam PPR repeat 225 252 IPR002885 -
Vvi18g1079 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vvi18g1079 544 Pfam DYW family of nucleic acid deaminases 452 544 IPR032867 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1079 - - - vvi:100242103 767.689
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002610 1 3 2 1 1 1 2 2 2 2 2 1 2 2 1 2 1 1 2 1 3 1 2 2 0 2 2 2 0 1 47