Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1088 ATGGGAGTACCAGCGTTCTACCGGTGGCTGGCCGAGAAGTATCCGCTGGTGGTGGTGGATGTGATCGAAGAAGAACCAGTCGAAATAGATGGCATTTCGATTCCTGTCGACACCAGTAAACCTAACCCTAACAACATCGAATACGACAATCTATACCTGGACATGAATGGGATTATTCACCCCTGCTTTCATCCTGAAGACCGGCCTTCTCCAACAACTTTTGATGAAGTATTTCAGTGCATGTTTGACTACATCGATAGACTTTTTGTGATGGTACGACCCCGAAAGCTTCTGTACATGGCTATTGATGGTGTTGCTCCAAGGGCTAAAATGAATCAACAACGCTCTAGGCGTTTCAGAGCAGCCAAAGATGCAGCTGATGCGGCAGCTGAAGAAGAACGGTTACGTGAAGAATTTGAGAAGGAGGGCAGAAAGCTTCCTCCAAAACAACAGTCCCAAGTTTGTGATTCTAATGTTATCACTCCTGGAACTGAATTTATGGGTGTCCTGTCAGTTGCATTGCAGTACTATATTCATCTTAGACTAAACAATGATCCTGGATGGAAATCTATTAAGGTCATCCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAACACAAAATAATGTCATATATTCGTCTTCAAAGAAATCTTCCTGGTTTTGATCCAAATACACGGCATTGTTTGTATGGATTGGATGCAGATCTAATCATGTTGGCTTTAGCTACACATGAAGTTCATTTTTCAATCCTAAGAGAGATTGTGTTCACTCCTGGACAACAAGATAAATGTTTCATGTGCGGTCAAATGGGTCATTTAGCAGCTGATTGTGAAGGAAAGGCAAAGAGAAAGGCAGGGGAGTTTGATGAGAAAGGACAGTCTGCTAGTGTGGTCAAAAAGCCATACCAGTTTCTCAACATTTGGACTCTCAGAGAGTATTTGGAATATGAAATGAGAATCCCTAATCTTCCATTTGAGATTGATTTTGAACACATTGTGGATGACTTTATCTTCATGTGTTTCTTTGTTGGCAATGATTTTTTGCCACATATGCCCACATTGGAGATCCGTGAGGGTGCAATTAATTTGCTGATGGCAGTATACAAGAAGGAACTCAGGGCAATGGGTGGTTATTTGACTGACTCAAGCAAGCCAAATTTAAGCAATGTGGAGCATTTCATTCAGGCTGTAGGCTCCTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTACATCAGCGGCAGGCAGAGAGAATCAAGCGTGAGAAGGCACAGGCAAGAAGAGGAGATGACGCAGACCCTCAAGTTAAACCTGAATTTCTGGTTCCTGTTTCTCGGTATCATGGCTCTCGTCTTGCTTCAGCGCCAACACCTTCGCCATATCAACAACATGAGATTAAAAGCAAACAGTCTGGGACATCTGGTAGTCAGGGACGTAAAGTTGCACGTTTTTCTTCAGGAGCCACTGTTGGTGCTGCAATTGTTGAAGCTGAGAATGATCTTGAAACAGAATTGCACGATAACAAAGACGAACTGAAAGCAAAGCTGAAGGAGTTACTCCGCGAGAAATCTGATCTTTTTAACTCCAAAAATCCAGAGGAAGACAAGGTTAAATTGGGAGAGGCAGGTTGGAAAGAAAGGTATTATGAAGAAAAGTTCTCCACAAAAACTCCTGAGGAACAAGAAGCAATGCGGAACGATGTTGTTTTGAAGTACACAGAAGGCCTCTGTTGGGTTATGCACTATTACTATGAAGGGGTATGTTCTTGGCAATGGTTTTATCCTTATCACTATGCACCATTTGCTTCTGATCTCAAAGATCTTGGTCAGTTGAATATAAGCTTTGAACTGGGTTCTCCCTTCAAACCATTTAATCAGCTATTGGGAGTTTTTCCAGCTGCCAGCTCCCATGCACTTCCTGAGGAATATAGGAAATTGATGACTGATCCAAACTCACCTATTATTGATTTTTATCCAACAGATTTTGAGGTGGACATGAATGGCAAACGGTTTGCTTGGCAGGGTATTGCAAAATTGCCTTTCATTGATGAAGCTCGCCTCCTGGCAGAGGTTCAAAAAATTGAGCACACTTTAACGGAGGAGGAATTCCGGAGAAACAGCGTGATGTTTGACATGCTTTTTGTGGCTCTATCGCATCCTCTCTCTCCATATATATTTTCTCTTGATGATCGTTGCAAAAAATTGACCGACAACGAGCGCACGGAAGTCAAGGAACAACTTGATCCCAGAGCCAGTGGTGGGATGAATGGTTACATATCCCTTTGTGGTGGAGATCCTTGCCCTCCTATTTTCAGATCACCTATTGCTAGTTTGGAAGATATTATGGATAACCAAGTCATCTGTGCTATATACAGACTTCCAGATGCTCATAAGCACATTACTCGACCACCTGTTGGAGTTACATTCCCAAAGAAGATTGTTAGTGTGGGGGATCTGAAACCTGAACCTGTTCTGTGGCATGAAGACAATGGAAGAAGGCCCTGGGAAAATGGAAGACAAAACCTCCCTGGGACTATTTCTGGTCGACAGCTTGGGGAGGCAGCACATCGGCTTGTTGTTAATAGCTTACAAGTAAAGGCAGAACCATCATAG 2613 42.79 MGVPAFYRWLAEKYPLVVVDVIEEEPVEIDGISIPVDTSKPNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKEGRKLPPKQQSQVCDSNVITPGTEFMGVLSVALQYYIHLRLNNDPGWKSIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEVHFSILREIVFTPGQQDKCFMCGQMGHLAADCEGKAKRKAGEFDEKGQSASVVKKPYQFLNIWTLREYLEYEMRIPNLPFEIDFEHIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKELRAMGGYLTDSSKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQAERIKREKAQARRGDDADPQVKPEFLVPVSRYHGSRLASAPTPSPYQQHEIKSKQSGTSGSQGRKVARFSSGATVGAAIVEAENDLETELHDNKDELKAKLKELLREKSDLFNSKNPEEDKVKLGEAGWKERYYEEKFSTKTPEEQEAMRNDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPEEYRKLMTDPNSPIIDFYPTDFEVDMNGKRFAWQGIAKLPFIDEARLLAEVQKIEHTLTEEEFRRNSVMFDMLFVALSHPLSPYIFSLDDRCKKLTDNERTEVKEQLDPRASGGMNGYISLCGGDPCPPIFRSPIASLEDIMDNQVICAIYRLPDAHKHITRPPVGVTFPKKIVSVGDLKPEPVLWHEDNGRRPWENGRQNLPGTISGRQLGEAAHRLVVNSLQVKAEPS* 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12032041 12069108 + Vvi18g1088 Vvi18g1088 780791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1088 870 CDD PIN_XRN1-2-like 51 314 - -
Vvi18g1088 870 Pfam Xrn1 helical domain 327 818 IPR041412 -
Vvi18g1088 870 Gene3D - 606 708 - -
Vvi18g1088 870 MobiDBLite consensus disorder prediction 415 439 - -
Vvi18g1088 870 Coils Coil 498 529 - -
Vvi18g1088 870 Coils Coil 122 142 - -
Vvi18g1088 870 ProSiteProfiles Zinc finger CCHC-type profile. 263 277 IPR001878 GO:0003676|GO:0008270
Vvi18g1088 870 SMART c2hcfinal6 263 279 IPR001878 GO:0003676|GO:0008270
Vvi18g1088 870 PANTHER 5'->3' EXORIBONUCLEASE 1 866 IPR027073 -
Vvi18g1088 870 SUPERFAMILY Retrovirus zinc finger-like domains 259 284 IPR036875 GO:0003676|GO:0008270
Vvi18g1088 870 Coils Coil 409 429 - -
Vvi18g1088 870 Gene3D - 1 133 - -
Vvi18g1088 870 Gene3D - 144 379 - -
Vvi18g1088 870 PIRSF Exonuclease_Xrn2 1 869 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vvi18g1088 870 MobiDBLite consensus disorder prediction 415 435 - -
Vvi18g1088 870 MobiDBLite consensus disorder prediction 451 481 - -
Vvi18g1088 870 MobiDBLite consensus disorder prediction 455 481 - -
Vvi18g1088 870 Pfam Zinc knuckle 263 277 IPR001878 GO:0003676|GO:0008270
Vvi18g1088 870 PANTHER 5'-3' EXORIBONUCLEASE 1 866 - -
Vvi18g1088 870 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1088 - - K12619 vvi:100260845 1723.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1088 . Blo12g00889 . Bda03g00284 . Bpe04g00241 Bma04g00241 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1394 Cone20ag0439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005436 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 2 1 39