Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g109 ATGGGATTCCCACTCATTGGAGAGACCATCCAGTTTTTCATCCCAAGCAAGTCCTTGGACGTTTCGAGTTTCATCAAGAAGAGGATGAAAAAATACGGTCCATTGTTCTGTACAAACTTGGCAGGACGACCGGTGGTGGTGTCGTCGGACCCAGACTTCAACTACTATATATTCCAACAAGAAGGGAAGTTGGTGGAGTTATGGTACATGGACTCCTTTGCAAGGCTTGTCGGCCTGGATCCTTCACAGTCTATTACTTCAACTGGTTATATTCACAAGTATGTTAAGAACTTGGCGTTGGCTCATATTGGTACCGAGGCCCTGAAAGACGGACTCCTTTCGAAGGCTGAAGATATGATACGTACAAGGCTGCATGATTGGTCCAAGTTGCCTGCCTTCGAATTCAAAGCATGCGTTTCATCGATGATATTTGATTTTACTGCAACCTCGTTGTTTGGTTATGACTTCAAGATGAAAGGAGCACATTTTAGTGAAAAATTTACAAACATCGTACATGCTCTTATTGCATTTCCTTTGAATATCCCGGGTACAACTTTCCATAAATGTCTAAAGGACCAAAAGGAGGCAATGAAGTTGATTCGTGATGTATTAAAAGAGAAAAAAGCTTCATCTAAAACACTTGAAGGAGATTTTCTTGATCAGATGGTTGATGATATGAAGAACGAAAAGTTCCTATCGGATGACTTTGTCGTTTTTGTTGTGTTCGGGTTTCTACTTGCTAGTTTTGAGACAATTTCCTCTACTTTAACCTTAGCTATTAAGTTACTCATAGAACACCCTTTAGTAATGCAAGAACTAATTGAGGAGCATGAGGCAATCCTTAAAAATAGGGAAGATCCAAATTCTGGAATTTCATGGAAGGAATATAAGTCAATGACTTTTACTCATCAAGTTATCAATGAAGCTCTTAGGTTAGGCAGTGTTGCTCCAGGGATTTTGAGAAGGGCAATAAAAGACATTCAAGTAAATGGATATACGATTCCAGCAGGCTGGACAATCATGGTTGTTCCCGCAGCTCTTCAACTAAATCCTAATACTTTTGTTGATCCCCTTGCTTTCAATCCATGGCGGTGGAAGGATATGGGAGTTGGTGTTGTAGCAAAGAATTTCATACCATTTGGAGGTGGATCGAGATTATGTGTAGGAGCAGAGTTTACTAAGGTTCTAATGACAACATTTTTCCATGTCTTGGTCACTAATTATAGGTTGACGAAGATCAAAGGAGGACAGATAGCTCGATCTCCAGCTTTGACATTTGGAAATGGTTTACATATCAACATTTCAAAAAAGCATCAATGA 1320 39.85 MGFPLIGETIQFFIPSKSLDVSSFIKKRMKKYGPLFCTNLAGRPVVVSSDPDFNYYIFQQEGKLVELWYMDSFARLVGLDPSQSITSTGYIHKYVKNLALAHIGTEALKDGLLSKAEDMIRTRLHDWSKLPAFEFKACVSSMIFDFTATSLFGYDFKMKGAHFSEKFTNIVHALIAFPLNIPGTTFHKCLKDQKEAMKLIRDVLKEKKASSKTLEGDFLDQMVDDMKNEKFLSDDFVVFVVFGFLLASFETISSTLTLAIKLLIEHPLVMQELIEEHEAILKNREDPNSGISWKEYKSMTFTHQVINEALRLGSVAPGILRRAIKDIQVNGYTIPAGWTIMVVPAALQLNPNTFVDPLAFNPWRWKDMGVGVVAKNFIPFGGGSRLCVGAEFTKVLMTTFFHVLVTNYRLTKIKGGQIARSPALTFGNGLHINISKKHQ* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1054581 1057697 - Vvi18g109 Vvi18g109 779812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g109 439 SUPERFAMILY Cytochrome P450 2 417 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 Gene3D Cytochrome P450 1 437 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 380 389 IPR017972 GO:0005506|GO:0016705
Vvi18g109 439 PRINTS P450 superfamily signature 247 264 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PRINTS P450 superfamily signature 304 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PRINTS P450 superfamily signature 378 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PRINTS P450 superfamily signature 387 398 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 Pfam Cytochrome P450 18 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PRINTS E-class P450 group I signature 29 48 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PRINTS E-class P450 group I signature 236 253 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PRINTS E-class P450 group I signature 256 282 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PRINTS E-class P450 group I signature 303 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PRINTS E-class P450 group I signature 343 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PRINTS E-class P450 group I signature 377 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PRINTS E-class P450 group I signature 387 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g109 439 PANTHER CYTOCHROME P450 87A3-LIKE 1 429 - -
Vvi18g109 439 PANTHER CYTOCHROME P450 26 1 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g109 - - - vvi:100244431 865.144
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1127 Vvi18g109 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001690 4 2 3 4 3 2 2 2 3 2 3 2 2 2 2 1 2 2 2 3 1 2 2 2 2 1 0 2 2 8 70