Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1093 ATGTTGTACATAATAGGCTTGGGCTTGGGCGATGAGAGAGACATAACGCTGAGGGGCCTGGAAGCTGTGAAGAAATGCAGCAAGGTCTTCATTGAAGCCTACACTTCTCTCCTCTCCTTTGGTCTTTCTTCCAATGGTCTTTCCACACTGGAAAATCTCTATGGGAAACCAATTACGCTTGCAGATAGAGAAATGGTGGAGGAAAAAGCGGATGATATTCTGTCCGATGCTCGTCACTCGGATGTGGGTTTCCTTGTTGTTGGTGATCCTTTTGGAGCTACAACACACTCTGATCTTGTTGTTCGAGCAAAGAAACTGGGGGTGGATGTCAAGGTGGTTCACAATGCATCAGTGATGAATGCAATTGGAATTTGTGGCTTACAACTTTACCGCTATGGGGAGACTATTTCCATTCCATTCTTCACTGAAACATGGAGACCTGACAGCTTTTATGAGAAGATCCAAAGAAATCGTGTGCTTGGATTGCATACCCTCTGCTTGTTGGATATACGTGTGAAGGAACCCTCGCTGGAATCTTTATGCAGAGGAAAAAAACAATATGAACCACCAAGATATATGACAATAAACACTGCCATTGAGCAGCTTTTGGAGGTTGAACAAATGCGTGGAGAATCTGCATTCTGTGAAGACACTGATTGTGTTGGTTTTGCCCGACTGGGAAGCGAGGATCAGATGATAGTTGCAGGCTCAATGAGGCAGCTGCTCAAGGTTGATTTTGGAGCACCTCTGCATTGTCTTGTCATAGTAGGCAAGACACATCCAGTGGAAGAAGAAATGCTGGATTTTTACAAACTTAAAGGAGAAAGTGCCGAGTCAAAACATAACCAGACTGCATGA 858 44.29 MLYIIGLGLGDERDITLRGLEAVKKCSKVFIEAYTSLLSFGLSSNGLSTLENLYGKPITLADREMVEEKADDILSDARHSDVGFLVVGDPFGATTHSDLVVRAKKLGVDVKVVHNASVMNAIGICGLQLYRYGETISIPFFTETWRPDSFYEKIQRNRVLGLHTLCLLDIRVKEPSLESLCRGKKQYEPPRYMTINTAIEQLLEVEQMRGESAFCEDTDCVGFARLGSEDQMIVAGSMRQLLKVDFGAPLHCLVIVGKTHPVEEEMLDFYKLKGESAESKHNQTA* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12137125 12140552 - Vvi18g1093 Vvi18g1093 780796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1093 285 PANTHER DIPHTHINE SYNTHASE 1 271 IPR004551 GO:0004164|GO:0017183
Vvi18g1093 285 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 1 241 IPR000878 GO:0008168
Vvi18g1093 285 CDD DHP5_DphB 1 259 IPR004551 GO:0004164|GO:0017183
Vvi18g1093 285 Hamap Diphthine synthase [dphB]. 1 273 IPR004551 GO:0004164|GO:0017183
Vvi18g1093 285 Gene3D - 1 116 IPR014777 GO:0008168
Vvi18g1093 285 PANTHER DIPHTHINE METHYL ESTER SYNTHASE 1 271 - -
Vvi18g1093 285 SUPERFAMILY Tetrapyrrole methylase 1 272 IPR035996 GO:0008168
Vvi18g1093 285 PIRSF Diphthine_synth 1 277 IPR004551 GO:0004164|GO:0017183
Vvi18g1093 285 TIGRFAM dph5: diphthine synthase 1 268 IPR004551 GO:0004164|GO:0017183
Vvi18g1093 285 Gene3D - 117 275 IPR014776 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1093 K00586 DPH5; diphthine methyl ester synthase [EC:2.1.1.314] - vvi:100242000 562.762
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1093 Blo01g01594 . Bda01g00490 . Bpe02g00353 . . Bma01g02365 Cmo05g00302 . . . . . Sed11g1084 . . Bhi04g00160 Tan02g2060 Cmetu03g2125 . Hepe10g0140 . Lcy13g1922 Cla08g01433 Cam08g1912 Cec08g1488 . Clacu08g1603 . Cre08g1388 . . Cone17ag1396 Cone20ag0085 . . . Cme03g01891 . . . . . . . . . . . . Cma05g00299 Car05g00247 . Cpe11g00248 . . . . . . . . . . . . . . . Lsi08g01332 Csa02g02123 Chy03g01395 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008487 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 34