Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1096 ATGGCTGTGTGGGGCGATGATCCAAGCCTTTCCAATCAACAATCTCGATTTCAATCCGACACTCGGAATCCGTCTCTGAATCCTTTCTTCCCTTCCTCTCAGCGGAAGCCTCATCTTTTCCCTTTCTTTTCTTGTCCAATGAACGACTCCTCTTTCGTCTCTGATACTCGTACGCACTGCCATAGCGACGACCGACAGTCTGCTTTTGTCAAGCTTCCGTTGAAGCAAACAAATGAAATAGACCATTGCAAGGGTCAGACTAGTAGACAAGCCACTCTTGATGGACATGGTGAAGAAATGAAATTTCCTTCCCTTGAACCAGAGTCTTGTGTGGGTGGTAAGCAGCAACACAGTAAATCAAAGGTGTCAAAAAATGCCAAATCTGGAGCTCAAAGATCAAATGCTGAGTCCCCGAATATTCTGAATCCAGTTGTTACTTGCCGTTATGACAGTTCACTAGGCTTGTTAACAAAGAAATTCATTAGTTTGATCCAGGAGGCTAAGGATGGGACCCTTGATCTAAACCGTACTGCAGATGTCTTGGAGGTCCAAAAGAGGAGAATATATGATATTACAAATGTTCTTGAAGGAATAGGATTGATTGAGAAAACTTCAAAGAACCATATTAGCTGGAAGGGATTTGACATGTCTGGGCCACAGAAGATGGATAATGAAGTCACGAGATTGAAGGCTGAAGTTGAAAGGTTATATGCTGAAGAATGTAGACTTGATGATTGCATAAGGGAAAAGCAGGAGCTTCTAAGGGCCATAGCTGGAGATGAAAATTGTCAAAAGCACCTCTTTTTGACAGAAGAAGATATTACAACACTTCCTTGCTTCCAGAATCAAACACTAATTGCAATAAAGGCTCCTCAAGCCAGTTCTGTTGAAGTTCCTGATCCTGATGAGGATATTGGTTTCTCACAAAGGCAGTTTAGAATCATTATCAGAAGCACCACAGGACCAATTGATTTATACTTGTTGAGAACTAAATCACTGGATTATTCTGTGGAGGATAGTGGCTGCAACAAACTTCAGGATGCAGGTCCGTTCAGCTCACTGGGCTCAGAGGGATCTGGGATTCAGAAGATTATCCCATCAGACTTTAAAATAGATGATGATTATTGGCTTCGATCAGATCCTGAAGTCAGCATTACAGATCTGTGGGCAAATGAGGATTGGGCCCAAGAAAATGACATCTTTCAAGAGGATTCCATAACGAGTGATGCATCCTTAGCTCAGACTCAACCATCACTAAGGGGGAGTCTGAGTGAACCGGACAAGAACCAGGCAGTTGGTTGCTCAGGTTGA 1311 42.87 MAVWGDDPSLSNQQSRFQSDTRNPSLNPFFPSSQRKPHLFPFFSCPMNDSSFVSDTRTHCHSDDRQSAFVKLPLKQTNEIDHCKGQTSRQATLDGHGEEMKFPSLEPESCVGGKQQHSKSKVSKNAKSGAQRSNAESPNILNPVVTCRYDSSLGLLTKKFISLIQEAKDGTLDLNRTADVLEVQKRRIYDITNVLEGIGLIEKTSKNHISWKGFDMSGPQKMDNEVTRLKAEVERLYAEECRLDDCIREKQELLRAIAGDENCQKHLFLTEEDITTLPCFQNQTLIAIKAPQASSVEVPDPDEDIGFSQRQFRIIIRSTTGPIDLYLLRTKSLDYSVEDSGCNKLQDAGPFSSLGSEGSGIQKIIPSDFKIDDDYWLRSDPEVSITDLWANEDWAQENDIFQEDSITSDASLAQTQPSLRGSLSEPDKNQAVGCSG* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12151851 12158339 - Vvi18g1096 Vvi18g1096 780799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1096 436 Pfam E2F transcription factor CC-MB domain 229 328 IPR032198 GO:0046983
Vvi18g1096 436 PANTHER TRANSCRIPTION FACTOR E2FC 16 392 - -
Vvi18g1096 436 SUPERFAMILY Winged helix DNA-binding domain 148 211 IPR036390 -
Vvi18g1096 436 MobiDBLite consensus disorder prediction 111 137 - -
Vvi18g1096 436 PANTHER TRANSCRIPTION FACTOR E2F 16 392 IPR015633 GO:0000978|GO:0006357
Vvi18g1096 436 Pfam E2F/DP family winged-helix DNA-binding domain 150 213 IPR003316 GO:0005667|GO:0006355
Vvi18g1096 436 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Vvi18g1096 436 MobiDBLite consensus disorder prediction 7 31 - -
Vvi18g1096 436 MobiDBLite consensus disorder prediction 1 31 - -
Vvi18g1096 436 CDD E2F_DD 224 328 IPR032198 GO:0046983
Vvi18g1096 436 MobiDBLite consensus disorder prediction 412 436 - -
Vvi18g1096 436 SMART E2F_TDP_2 148 213 IPR003316 GO:0005667|GO:0006355
Vvi18g1096 436 Gene3D - 220 330 - -
Vvi18g1096 436 MobiDBLite consensus disorder prediction 98 137 - -
Vvi18g1096 436 Gene3D - 143 215 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1096 K06620 E2F3; transcription factor E2F3 - vvi:100247139 875.544
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g681 ECH 443 812 E2F-DP Transcription Factor Family AT3G48160 55.4 7.9e-104 374.4
Vvi14g1456 ECH 17 363 E2F-DP Transcription Factor Family AT3G48160 52.6 7.0e-92 334.7
Vvi14g1456 ECH 5 367 E2F-DP Transcription Factor Family AT3G01330 53.0 1.6e-92 336.7
Vvi17g681 ECH 457 806 E2F-DP Transcription Factor Family AT3G01330 52.5 4.4e-90 328.6
Vvi8g715 . 106 335 E2F-DP Transcription Factor Family AT5G02470 57.3 1.0e-68 257.3
Vvi8g523 . 85 288 E2F-DP Transcription Factor Family AT5G02470 55.1 5.1e-60 228.4
Vvi8g917 ECH 10 467 E2F-DP Transcription Factor Family AT2G36010 58.0 7.0e-139 491.1
Vvi6g1278 ECH 3 447 E2F-DP Transcription Factor Family AT2G36010 53.0 3.3e-112 402.5
Vvi6g1278 ECH 14 444 E2F-DP Transcription Factor Family AT5G22220 54.9 8.3e-113 404.4
Vvi8g917 ECH 27 464 E2F-DP Transcription Factor Family AT5G22220 53.7 2.8e-108 389.4
Vvi18g1096 . 114 391 E2F-DP Transcription Factor Family AT1G47870 55.7 2.9e-74 276.2
Vvi8g917 ECH 142 418 E2F-DP Transcription Factor Family AT1G47870 50.2 6.0e-64 241.9
Vvi8g715 . 106 335 E2F-DP Transcription Factor Family AT5G02470 57.3 1.0e-68 257.3
Vvi8g523 . 85 288 E2F-DP Transcription Factor Family AT5G02470 55.1 5.1e-60 228.4
Vvi6g1278 ECH 14 444 E2F-DP Transcription Factor Family AT5G22220 54.9 8.3e-113 404.4
Vvi8g917 ECH 27 464 E2F-DP Transcription Factor Family AT5G22220 53.7 2.8e-108 389.4
Vvi8g917 ECH 10 467 E2F-DP Transcription Factor Family AT2G36010 58.0 7.0e-139 491.1
Vvi6g1278 ECH 3 447 E2F-DP Transcription Factor Family AT2G36010 53.0 3.3e-112 402.5
Vvi18g1096 . 114 391 E2F-DP Transcription Factor Family AT1G47870 55.7 2.9e-74 276.2
Vvi8g917 ECH 142 418 E2F-DP Transcription Factor Family AT1G47870 50.2 6.0e-64 241.9
Vvi14g1456 ECH 5 367 E2F-DP Transcription Factor Family AT3G01330 53.0 1.6e-92 336.7
Vvi17g681 ECH 457 806 E2F-DP Transcription Factor Family AT3G01330 52.5 4.4e-90 328.6
Vvi17g681 ECH 443 812 E2F-DP Transcription Factor Family AT3G48160 55.4 7.9e-104 374.4
Vvi14g1456 ECH 17 363 E2F-DP Transcription Factor Family AT3G48160 52.6 7.0e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14268 PF16421 E2F_CC-MB 1.10E-26 No_clan Vvi TF