Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1096 ATGGCTGTGTGGGGCGATGATCCAAGCCTTTCCAATCAACAATCTCGATTTCAATCCGACACTCGGAATCCGTCTCTGAATCCTTTCTTCCCTTCCTCTCAGCGGAAGCCTCATCTTTTCCCTTTCTTTTCTTGTCCAATGAACGACTCCTCTTTCGTCTCTGATACTCGTACGCACTGCCATAGCGACGACCGACAGTCTGCTTTTGTCAAGCTTCCGTTGAAGCAAACAAATGAAATAGACCATTGCAAGGGTCAGACTAGTAGACAAGCCACTCTTGATGGACATGGTGAAGAAATGAAATTTCCTTCCCTTGAACCAGAGTCTTGTGTGGGTGGTAAGCAGCAACACAGTAAATCAAAGGTGTCAAAAAATGCCAAATCTGGAGCTCAAAGATCAAATGCTGAGTCCCCGAATATTCTGAATCCAGTTGTTACTTGCCGTTATGACAGTTCACTAGGCTTGTTAACAAAGAAATTCATTAGTTTGATCCAGGAGGCTAAGGATGGGACCCTTGATCTAAACCGTACTGCAGATGTCTTGGAGGTCCAAAAGAGGAGAATATATGATATTACAAATGTTCTTGAAGGAATAGGATTGATTGAGAAAACTTCAAAGAACCATATTAGCTGGAAGGGATTTGACATGTCTGGGCCACAGAAGATGGATAATGAAGTCACGAGATTGAAGGCTGAAGTTGAAAGGTTATATGCTGAAGAATGTAGACTTGATGATTGCATAAGGGAAAAGCAGGAGCTTCTAAGGGCCATAGCTGGAGATGAAAATTGTCAAAAGCACCTCTTTTTGACAGAAGAAGATATTACAACACTTCCTTGCTTCCAGAATCAAACACTAATTGCAATAAAGGCTCCTCAAGCCAGTTCTGTTGAAGTTCCTGATCCTGATGAGGATATTGGTTTCTCACAAAGGCAGTTTAGAATCATTATCAGAAGCACCACAGGACCAATTGATTTATACTTGTTGAGAACTAAATCACTGGATTATTCTGTGGAGGATAGTGGCTGCAACAAACTTCAGGATGCAGGTCCGTTCAGCTCACTGGGCTCAGAGGGATCTGGGATTCAGAAGATTATCCCATCAGACTTTAAAATAGATGATGATTATTGGCTTCGATCAGATCCTGAAGTCAGCATTACAGATCTGTGGGCAAATGAGGATTGGGCCCAAGAAAATGACATCTTTCAAGAGGATTCCATAACGAGTGATGCATCCTTAGCTCAGACTCAACCATCACTAAGGGGGAGTCTGAGTGAACCGGACAAGAACCAGGCAGTTGGTTGCTCAGGTTGA 1311 42.87 MAVWGDDPSLSNQQSRFQSDTRNPSLNPFFPSSQRKPHLFPFFSCPMNDSSFVSDTRTHCHSDDRQSAFVKLPLKQTNEIDHCKGQTSRQATLDGHGEEMKFPSLEPESCVGGKQQHSKSKVSKNAKSGAQRSNAESPNILNPVVTCRYDSSLGLLTKKFISLIQEAKDGTLDLNRTADVLEVQKRRIYDITNVLEGIGLIEKTSKNHISWKGFDMSGPQKMDNEVTRLKAEVERLYAEECRLDDCIREKQELLRAIAGDENCQKHLFLTEEDITTLPCFQNQTLIAIKAPQASSVEVPDPDEDIGFSQRQFRIIIRSTTGPIDLYLLRTKSLDYSVEDSGCNKLQDAGPFSSLGSEGSGIQKIIPSDFKIDDDYWLRSDPEVSITDLWANEDWAQENDIFQEDSITSDASLAQTQPSLRGSLSEPDKNQAVGCSG* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12151851 12158339 - Vvi18g1096 Vvi18g1096 780799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1096 436 Pfam E2F transcription factor CC-MB domain 229 328 IPR032198 GO:0046983
Vvi18g1096 436 PANTHER TRANSCRIPTION FACTOR E2FC 16 392 - -
Vvi18g1096 436 SUPERFAMILY Winged helix DNA-binding domain 148 211 IPR036390 -
Vvi18g1096 436 MobiDBLite consensus disorder prediction 111 137 - -
Vvi18g1096 436 PANTHER TRANSCRIPTION FACTOR E2F 16 392 IPR015633 GO:0000978|GO:0006357
Vvi18g1096 436 Pfam E2F/DP family winged-helix DNA-binding domain 150 213 IPR003316 GO:0005667|GO:0006355
Vvi18g1096 436 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Vvi18g1096 436 MobiDBLite consensus disorder prediction 7 31 - -
Vvi18g1096 436 MobiDBLite consensus disorder prediction 1 31 - -
Vvi18g1096 436 CDD E2F_DD 224 328 IPR032198 GO:0046983
Vvi18g1096 436 MobiDBLite consensus disorder prediction 412 436 - -
Vvi18g1096 436 SMART E2F_TDP_2 148 213 IPR003316 GO:0005667|GO:0006355
Vvi18g1096 436 Gene3D - 220 330 - -
Vvi18g1096 436 MobiDBLite consensus disorder prediction 98 137 - -
Vvi18g1096 436 Gene3D - 143 215 IPR036388 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14268 PF16421 E2F_CC-MB 1.10E-26 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1096 K06620 - vvi:100247139 875.544