Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1098 ATGCAATTTAGGAAGCTTTCTGGGTGTTATGAGTGTCACATGATAGTTGATCCAAACAGGTACCCATCTCCAAGAACAACTATATGTGCTTGCTCTGAGTGTGGAGAGGTTTTTCCAAAGACTGAAAGCTTAGAGCTTCATCAAGCAGTTCGCCATGCCGTTTCGGAGCTGGGTCCGGAGGATTCGGGTCGGAACATCGTGGAGATCATCTTTAAATCGAGCTGGTTGAAGAAAGACAATCCAATCTGCAAGATCGAACGGATACTAAAAGTCCACAACACCCAGAGGACCATCCAACGGTTCGAGGAATGCCGAGACGCGGTGAAGGTCCGTGCGAACAATAACACCAAGAAAAACCCGCGCTGTGCCGCGGACGGAAACGAGCTGCTGCGGTTCCATTGCACCACCTTAACCTGCGCTCTCGGCTCACGTGGCTCCTCCAGCCTATGCGGCTCCGTACCGGGCTGCGGAGTATGCACCATCATCAGGCACGGATTCCAAGGCAAGGCAGAAATTGAAGTAGAAAAATACTTTAGGGAAGAATTTGAAGAAGAATCTTGTAAGGTAAGGCGAAAAGATGTCCAAGGTTTGATTGAAGTTGAGAATCCTAATTGGGGGAAACTAGATATCTTCAAAATTAGAGATATTTATATTGAAAAAACAACTCAACTTTTCAGACGTGAAAAAAATGAAATAGATAAGCAAAAAAGACACGAACAAGGTATAAAATTACACGAACTTCATCGTTTCTTGTTGATTTTGAGTCACAATCTGTGCATCCTTGAAGCCACAATGAAGAGAAAGAGTTGCAGTCCTTGCGACTCTCTCGAGAGCTTCTTTGATGATAATGAATTGGAGGTTTCTGAAATCCTGATCCAAATTCCCCTCATAATCTTCCAAGCTGAGAATCGCAATCGTCTTTTAGTCCCTTGGGGCGTTAGGAAGAGAAGATCTGCCATTGATCCTGAGTTATATCCGCCTTCTGTTCCTTCATCGTCGTCGCCTCATCTTCCCGGGACTTGTGTGGGTCCGACTTGTGACGATGATGATCCTCAAGCGAAGGTCGAACCTTCCAGCCCTGCCACGCCTCTCTCCTTCTCCCCCAGCGAAACTGATGGCAAGTCTAAGCGCTCTAAGAAGAGTGTTTCATCTAAAAAGAAGAAGGAAAATTTGTTGAAGATGGTTGAGGATTTGACTCATCAGAAGGAGTCGCTAATGACGGTGAGTTTGTTAATCTGA 1239 45.52 MQFRKLSGCYECHMIVDPNRYPSPRTTICACSECGEVFPKTESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICKIERILKVHNTQRTIQRFEECRDAVKVRANNNTKKNPRCAADGNELLRFHCTTLTCALGSRGSSSLCGSVPGCGVCTIIRHGFQGKAEIEVEKYFREEFEEESCKVRRKDVQGLIEVENPNWGKLDIFKIRDIYIEKTTQLFRREKNEIDKQKRHEQGIKLHELHRFLLILSHNLCILEATMKRKSCSPCDSLESFFDDNELEVSEILIQIPLIIFQAENRNRLLVPWGVRKRRSAIDPELYPPSVPSSSSPHLPGTCVGPTCDDDDPQAKVEPSSPATPLSFSPSETDGKSKRSKKSVSSKKKKENLLKMVEDLTHQKESLMTVSLLI* 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12179503 12193505 + Vvi18g1098 Vvi18g1098 780801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1098 412 Gene3D - 53 178 - -
Vvi18g1098 412 MobiDBLite consensus disorder prediction 324 390 - -
Vvi18g1098 412 SUPERFAMILY ADP-ribosylation 54 167 - -
Vvi18g1098 412 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 171 - -
Vvi18g1098 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 57 IPR013087 -
Vvi18g1098 412 ProSitePatterns Zinc finger C2H2 type domain signature. 29 52 IPR013087 -
Vvi18g1098 412 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 171 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14269 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1098 - - vvi:100250572 348.591