Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g110 ATGCGCCTTCTCAGTGCGTCGGTGACAATTACAGGCACCCATCCTTTTTTCCTATATAAACTTAATTTTTTACGTACTTTCTATTCCACTTATAACTTAATTAAGATCATGTACTGGTCTGTTTGGTTGTGCGTTGTAAGCTTGTTTATAGCAAGCATAATTCACTGGGTTTACAAATGGAGGAATCCTAAATGCAATGGCAAACTCCCTCCAGGTTCAATGGGATTCCCACTCATTGGAGAGACCATCCAGTTTTTCATCCCAAGCAAGTCGTTGGACGTTTCGAGTTTCATCAGGAAGAGGATGAAAAAATATGGTCCATTGTTTTGTACAAACTTGGTAGGACGACCGGTAGTGGTGTCATCGGACCCAGACTTCAACTACTATATATTCCAACAAGAAGGGAGGTTGGTGGAGATCTGGTACTTGGACTCCTTCGCAAGGCTTGTGGGTCAGGATGCTTCACAGTCTACCGCTGCGTCTGGTTATGTTCACAAGTATCTTAGGAACTTGGTGTTGGCTCATTTTGGTACGGAGGTCCTGAAAGACAAACTCCTTTCGAAGGCTGAAGATATGATACGTACAAGGCTGCATGATTGGTCCAAGTTGCCTGCCTTGGAATTCAAAACATGCGTTTCATCGATGATATTTGATTTTACTGCAAATGAGTTGTTCAGTTATGATATTAAGAAGATGGGAGAAAATTTTAGTGAAAGATTTACCAATATCATACAAGCTGTTGCTTCGTTTCCTTTGAATATCCCGGGTACAACTTTCCATAAATGTCTCAAGAACCAAAAGGAGGTAATAAAGTTGATCCGTGATATACTAAAAGAGAGAAAAGTTTCACCTGAAAGTCGTAAAGGAGATTTCCTTGATCAGATTGTTGATGATATAAAGAAAGAAAAATTCTTATCAGATGACTTCATCGTTCTTGTTATGTTTGGGATTCTACTTGCTAGTTTTGAGACAATTTCTGCTACTCTAACCTTAGCTGTGAAGCTCCTCATAGAAAACCCTTCAGTAATGCAAGAACTAATTGAGGAGCATGAGGCAATCCTTAAAAATAGGGAAAATTCAAATTCTGGAATTTCATGGAAGGAATATAAGTCAATGACTTTTACTCATCAAGTTATCAATGAAGCTCTTAGGTTAGCAAGTGTTGCTCCAGGGATTTTGAGAAGGGCAATAAAAGACATTCAAGTAAATGGATATACGATTCCAGCAGGCTGGACAATCATGGTTGTTCCCGCAGCTCTTCAACTAAGCCCTGATGCTTTTGTTGATCCCCTTGCTTTCAATCCATCGCGGTGGAAGGATATGGGAGTTGGTGTTGTAGCGAAGAATTTCATACCATTTGGAGGTGGATCGAGATTATGTGCAGGAGCAGAGTTTACTAAGGTTCTAATGACAACATTTTTCCATGTCTTGGTCACTAATTATAGGTTGACGAAGATCAAAGGAGGACAGATAGCTCGATCTCCAGCTTTGACATTTGGAAATGGTTTACATATCAACATTTCAAAAAAGCATGGATGA 1539 39.7 MRLLSASVTITGTHPFFLYKLNFLRTFYSTYNLIKIMYWSVWLCVVSLFIASIIHWVYKWRNPKCNGKLPPGSMGFPLIGETIQFFIPSKSLDVSSFIRKRMKKYGPLFCTNLVGRPVVVSSDPDFNYYIFQQEGRLVEIWYLDSFARLVGQDASQSTAASGYVHKYLRNLVLAHFGTEVLKDKLLSKAEDMIRTRLHDWSKLPALEFKTCVSSMIFDFTANELFSYDIKKMGENFSERFTNIIQAVASFPLNIPGTTFHKCLKNQKEVIKLIRDILKERKVSPESRKGDFLDQIVDDIKKEKFLSDDFIVLVMFGILLASFETISATLTLAVKLLIENPSVMQELIEEHEAILKNRENSNSGISWKEYKSMTFTHQVINEALRLASVAPGILRRAIKDIQVNGYTIPAGWTIMVVPAALQLSPDAFVDPLAFNPSRWKDMGVGVVAKNFIPFGGGSRLCAGAEFTKVLMTTFFHVLVTNYRLTKIKGGQIARSPALTFGNGLHINISKKHG* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1084790 1087907 - Vvi18g110 Vvi18g110 779813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g110 512 Pfam Cytochrome P450 70 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 SUPERFAMILY Cytochrome P450 66 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Vvi18g110 512 PRINTS E-class P450 group I signature 102 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PANTHER CYTOCHROME P450 26 46 502 - -
Vvi18g110 512 Gene3D Cytochrome P450 61 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g110 512 PANTHER CYTOCHROME P450 87A3-LIKE 46 502 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g110 - - vvi:100252239 956.436