Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1100 ATGAATTATTATAAAAGGATAGGAAAGGGAAAAGGAAAGTTGAAGGGCAAATCCGTTGGTATGCGTCAATTCTCCACCGATGAGGAGATTGTGGCTAGTATCTTTATTCATTCTAGTACTTTCAATCAAGAAGAAATTGAAGGAAAAGAAGAATACTCTGGAGAAGAATTTGAAGAAGAACCTCGTGAGGTAAGGCGAAAAGGTGTCCAAGGTTTGATTGAGGTTGAGAATCCTAATTGGGGGAAGCCAAATGTCTTGAAAGTTAAAGACATTGATGTTGAAAAAATAACTCAACTTTCCAAGCATGAAAAAAATGAAATAGATAAACAGAAAAGATATGAACGAGGTATGAAATTACACGAGGAAGGGAAAACAGAACAAGCAAAGAAAGATTTAGAACGTTTAACTTTGATTCGGCAACAAAGAGTTGATACTGCTAAAAAGCGAGAAGAAGAAAAAGCTTTCAAAGAGAAAAAGAAGGAAGAAAAAGCTTTCAAAGAGAAAAAGAAGGCCGAGGCTCGAAAAAAAAAGGTGAAAATAGTTGGGTATTTTTTTTTCTTTCTTTTTTTTTTGACCATTTTACCATATGTAAAAGGGGGGGAAAAGCTATTGGAGTTGGTAGAAATTACAGAAATGTCACTAGCCACTAAACGAAGGGAATGA 663 34.99 MNYYKRIGKGKGKLKGKSVGMRQFSTDEEIVASIFIHSSTFNQEEIEGKEEYSGEEFEEEPREVRRKGVQGLIEVENPNWGKPNVLKVKDIDVEKITQLSKHEKNEIDKQKRYERGMKLHEEGKTEQAKKDLERLTLIRQQRVDTAKKREEEKAFKEKKKEEKAFKEKKKAEARKKKVKIVGYFFFFLFFLTILPYVKGGEKLLELVEITEMSLATKRRE* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12200591 12208186 + Vvi18g1100 Vvi18g1100 780803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1100 220 PANTHER 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN-LIKE ISOFORM X1 10 162 - -
Vvi18g1100 220 Pfam Casein kinase substrate phosphoprotein PP28 77 154 IPR019380 -
Vvi18g1100 220 Coils Coil 148 176 - -
Vvi18g1100 220 MobiDBLite consensus disorder prediction 147 168 - -
Vvi18g1100 220 PANTHER 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN PDGF-ASSOCIATED PROTEIN 10 162 IPR039876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1100 - - - vvi:100258915 148.288
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002484 3 2 2 1 3 2 3 2 2 1 1 2 2 2 2 2 2 3 3 2 2 2 2 1 1 1 2 3 2 2 60