Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1101 ATGGTCGGAACAGATGAGAATAACCCAGGTGTGGGTGTGATCGGACCAGCAAATAATCAAGGAGGTTTACGTGCCGGAGTTGGGAAATTCACCACTGGGATCGGGCACAACCGAAGAGCTTTGAGCAGCATTGACCGGAATATAATCGGAGTTCCTCCTTACCCTTGTGCAGTAAACAAAAGGGCTTTGTCTGAAAAAGAAGCAGCCTGTGATAAGAAACACCCACCAATTCCGATGCATCGACCCATTACTAGGAAGTTCGCTGCACAAATGGCTAGCAACAAGCAGCAGCGAGCAGCTATACCTGAGGAATCAAGGAAATTGGTCCTACAGTCAGCACCTAGTGAATTAAAGGATTGTGTCTTTGTTGATGCGGAAGACTGCAAGGGTACCAGTGACTTACCTGTGCCAATGTCTGTGCAACACACTGAGGCAATGCTAGAGGAAATTGATAGGATGGAGGAGGAGATCGAGATGGAAGATTTGGTGAAAGAGCCTGTGATGGACATAGACGGCTCCGATAACAAGAATTCACTTGCAGTTGTTGAGTACATTGATGAAATATATGCATACTATAGGAAAACAGAGAGTTCTAGCTGTGTCTCACCAGATTATATGTCACAGCAATTTGACATTAATGACAGGATGAGAGGCATCCTTATTGATTGGCTGATTGAGGTGCATTACAAGTTTGAACTGATGGATGAGACATTATATCTTACTGTCAATCTTATTGATAGATTTCTGGCGCTCCAACCAGTGGTGAGGAAGAAGCTCCAGCTGGTTGGTGTCACAGCCATGCTTCTTGCCTGCAAGTATGAGGAAGTGACTGTTCCAATTGTGGAGGATCTCATCTTGATCTCAGACAAGGCTTACAGTAGAAAGGAAGTTCTTGACATGGAGAAATTAATGGTCAATACGTTACAATTTAACATGTCTGTCCCCACGCCATATGTGTTTATGAGAAGGTTTCTGAAAGCTGCCCAATCTGACAAGAAGCTTGAGCTTCTGTCGTTTTTCATAATTGAACTATGCCTGGTGGAGTATGAAATGCTCAAGTTTTCACCTTCTTTGTTAGCGGCTGCAGCAATCTTCACTGCTCAATGTACTCTTAACGGGTCTAAGCATTGGAGCAGGACTTGTGAATGGTACACTAGATACACAGAAGAGCAGCTCTTGGAATGCTCAAGGTTAATGGTTTCTTTCCATCAGCAGGCTGGAACGGGGAAACTCACAGGGGTTCACCGAAAATATAGCACATCCAAGTTTGGACATACTGCAAAATCTGAACCGGCTCACTTTCTTGTAGAGGAGCGACCAAGCTAA 1326 44.42 MVGTDENNPGVGVIGPANNQGGLRAGVGKFTTGIGHNRRALSSIDRNIIGVPPYPCAVNKRALSEKEAACDKKHPPIPMHRPITRKFAAQMASNKQQRAAIPEESRKLVLQSAPSELKDCVFVDAEDCKGTSDLPVPMSVQHTEAMLEEIDRMEEEIEMEDLVKEPVMDIDGSDNKNSLAVVEYIDEIYAYYRKTESSSCVSPDYMSQQFDINDRMRGILIDWLIEVHYKFELMDETLYLTVNLIDRFLALQPVVRKKLQLVGVTAMLLACKYEEVTVPIVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLSFFIIELCLVEYEMLKFSPSLLAAAAIFTAQCTLNGSKHWSRTCEWYTRYTEEQLLECSRLMVSFHQQAGTGKLTGVHRKYSTSKFGHTAKSEPAHFLVEERPS* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12212223 12215228 - Vvi18g1101 Vvi18g1101 780804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1101 441 PIRSF Cyclin_A_B_D_E 31 441 IPR039361 -
Vvi18g1101 441 ProSitePatterns Cyclins signature. 217 248 IPR006671 -
Vvi18g1101 441 CDD CYCLIN 313 400 IPR013763 -
Vvi18g1101 441 SMART Cyclin_C_2 315 432 IPR004367 -
Vvi18g1101 441 CDD CYCLIN 216 305 IPR013763 -
Vvi18g1101 441 Pfam Cyclin, N-terminal domain 187 313 IPR006671 -
Vvi18g1101 441 Gene3D - 201 313 - -
Vvi18g1101 441 PANTHER CYCLINS 26 433 IPR039361 -
Vvi18g1101 441 Pfam Cyclin, C-terminal domain 315 430 IPR004367 -
Vvi18g1101 441 Gene3D - 187 427 - -
Vvi18g1101 441 PANTHER CYCLIN-B2-3-RELATED 26 433 - -
Vvi18g1101 441 SMART cyclin_7 319 401 IPR013763 -
Vvi18g1101 441 SMART cyclin_7 222 306 IPR013763 -
Vvi18g1101 441 SUPERFAMILY Cyclin-like 314 432 IPR036915 -
Vvi18g1101 441 SUPERFAMILY Cyclin-like 176 312 IPR036915 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1330 Vvi18g1101 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1101 K21777 - vvi:100267672 858.596