Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1102 ATGGTGATGGATGGCGAGGTCGAAGAAGGCGGAGGAGGACAAGTGGTGGAGACTGGGGAGGAGGAGACTGCTCCCAATGCGTCCAACACTCAAGGGTGCACCTGTGAGGTTCAAGAACTGATGGTCGTGATTGGGTCCATTGTAGCCATTGGAGATTATAGGAGGACGCAGAAGAAGGAGTGCCAAAACCTAGTAAGGCGGTTGAAGTTATTGTTGCCGCTTTTAGAAGATGTAAAGGACCTCCATGGCCAAGTTCCCGAGAAGTCTTTAAATCCATTCTGGAATTTGAAGAAGGCGCTTCTACGTGTCAAGAAACTCTTGATAACTTGCAGTGAGGGAAGCAAGATTTATCTGGCACTTGAGAATGAAGCAGTCATGGCTAGATTTCATCGTGCCAATGAAAAATTAAGTCAAGCTTTGGAAGATTTGCCTTATGAAGAGCTTGGAGTCTCAGAGGAAGTAAAAGAAGAGCTTGATTTAGTGCGCATGCACCTCAAACGATCCAAGAGGCGAACAGACACTCAGGATATTGAACTTGCAATGGATATGATGGTGGTATTCTCAAAAGACGATGAACGGAATGCGGATAGTGCAATAATAGTGAGGCTGGCAAAGAAGCTGGAACTGCTTACAGTTGAGGACTTGAATGCAGAAACAATAGCTGTAAGAAAACTTGTGAAAGAAAGAGGAGGACAAAATGCAGAGAGTACCCAGCATGTGATTGAACTTCTGAATAAATTCAGACAAAGTGGAGGGCTTGAAGAGATCAATGTGCTTGATGATCCCATTGTGCCCAAAACTCTTGAGAAATCCCCATCTTTGGCTATCCCTCATGAGTTCCTCTGCCCAATCACATTAGAAATAATGACTGATCCTGTTTTTGTAGCAACTGGACAGACATATGAAAGAGAAAGCATACAGAAGTGGTTGGACTCCAACCATAAAACCTGTCCAAAGACAATGCAACCTTTGGTTCACTCCTCGCTTGTGCCAAACTATGCCCTCAGAAACCTGATCCTTCAGTGGTGTGAGAACAATAATTTTCAAATTCCCAAAAAGGATGCTTCTTCAAGCACTGAGGGCTCCTCTGAGCAGAAAGAGTCTGTCTTGTCTGTGGTTCAAAACCTATCCTCTAATCAATTGGAAGTGCAGAGAAAAGCAGCGAAGAAGATCCGAATGCTCTCGAAAGAGAATCCAGTGAACCGAGTTCTGATTGCCCAGAGTGGAGGAATCCCACCATTAGTGCAACTCCTGTCCTATCCAGATTCCAAGATTCAAGAGCACACTGTAACAGCTCTGTTGAACTTGTCAATTGATGAGGCCAACAAGAAACTCATTGCTATAGAAGGAGCCATTCCAGCTATAATAGATGTCCTACGGAAAGGAAGCGTTGAGGCTAAAGGGAACTCTGCAGCGGCATTATTCAGTTTGTCGATAGATGATGATATTAAAGCAGCAATCGGGCTCTCTAATGGCATCCCGCCGTTGGTGGATTTGTTGCAGCATGGGACAATCAGAGGCAAAAGGGATGCTGCCACAGCACTCTTTAACCTCTCTCTCAACAAGGCAAATAAGACCAGGGCCATTGAGGCTGGTGTTATTCCACCTTTACTCCAGTTAATTAAGAGCCCAAACTCGGGCATGATTGACGAGGCCCTCTCTATCTTGTTCCTCCTGGCATCACATCCGGACGGGCGGCAAGAGATTGGACAGCTCTCAGTCATTGAAACTCTTGTTGAGTTTATCAGAGATGGGACCACCAAGAACAAAGAATGCGCCACATCGGTTCTTCTTGAGCTGGGGTCTAGCAATTCCTCTTTCATTTTGGCTGCACTTCAGTATGGTGTGTTAGAGCATTTGATTGAGATTACAAAGAGCGGAAACAGCAGAGCCCAAAGGAAAGCTAACTCACTTTTACAGCTCATGAGTCGAATCAGTTTCTTAAGGCAGATGTGTGCAGTGAATATACTTACTTTTGGCAAGAAGTTTTTACGACACATTCTCCCCACTCGTCTCTTTACAGTTGTTTTCTTGATAGAGAACATGTCTGTGTGA 2055 44.82 MVMDGEVEEGGGGQVVETGEEETAPNASNTQGCTCEVQELMVVIGSIVAIGDYRRTQKKECQNLVRRLKLLLPLLEDVKDLHGQVPEKSLNPFWNLKKALLRVKKLLITCSEGSKIYLALENEAVMARFHRANEKLSQALEDLPYEELGVSEEVKEELDLVRMHLKRSKRRTDTQDIELAMDMMVVFSKDDERNADSAIIVRLAKKLELLTVEDLNAETIAVRKLVKERGGQNAESTQHVIELLNKFRQSGGLEEINVLDDPIVPKTLEKSPSLAIPHEFLCPITLEIMTDPVFVATGQTYERESIQKWLDSNHKTCPKTMQPLVHSSLVPNYALRNLILQWCENNNFQIPKKDASSSTEGSSEQKESVLSVVQNLSSNQLEVQRKAAKKIRMLSKENPVNRVLIAQSGGIPPLVQLLSYPDSKIQEHTVTALLNLSIDEANKKLIAIEGAIPAIIDVLRKGSVEAKGNSAAALFSLSIDDDIKAAIGLSNGIPPLVDLLQHGTIRGKRDAATALFNLSLNKANKTRAIEAGVIPPLLQLIKSPNSGMIDEALSILFLLASHPDGRQEIGQLSVIETLVEFIRDGTTKNKECATSVLLELGSSNSSFILAALQYGVLEHLIEITKSGNSRAQRKANSLLQLMSRISFLRQMCAVNILTFGKKFLRHILPTRLFTVVFLIENMSV* 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12216224 12219253 - Vvi18g1102 Vvi18g1102 780805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1102 684 SUPERFAMILY RING/U-box 273 350 - -
Vvi18g1102 684 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Vvi18g1102 684 MobiDBLite consensus disorder prediction 1 30 - -
Vvi18g1102 684 SMART arm_5 398 438 IPR000225 GO:0005515
Vvi18g1102 684 SMART arm_5 562 602 IPR000225 GO:0005515
Vvi18g1102 684 SMART arm_5 439 479 IPR000225 GO:0005515
Vvi18g1102 684 SMART arm_5 521 561 IPR000225 GO:0005515
Vvi18g1102 684 SMART arm_5 604 644 IPR000225 GO:0005515
Vvi18g1102 684 SMART arm_5 480 520 IPR000225 GO:0005515
Vvi18g1102 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 347 IPR013083 -
Vvi18g1102 684 Gene3D - 348 670 IPR011989 -
Vvi18g1102 684 Gene3D - 35 146 IPR036537 GO:0007166
Vvi18g1102 684 PANTHER U BOX DOMAIN-CONTAINING 26 645 - -
Vvi18g1102 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Vvi18g1102 684 CDD RING-Ubox_PUB 280 322 IPR045210 -
Vvi18g1102 684 Pfam U-box domain 276 346 IPR003613 GO:0004842|GO:0016567
Vvi18g1102 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 532 569 IPR000225 GO:0005515
Vvi18g1102 684 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Vvi18g1102 684 Pfam Armadillo/beta-catenin-like repeat 523 559 IPR000225 GO:0005515
Vvi18g1102 684 Pfam Armadillo/beta-catenin-like repeat 485 519 IPR000225 GO:0005515
Vvi18g1102 684 SUPERFAMILY ARM repeat 368 644 IPR016024 -
Vvi18g1102 684 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Vvi18g1102 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 491 533 IPR000225 GO:0005515
Vvi18g1102 684 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 26 645 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1102 - - vvi:100245355 1181.01