Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1117 ATGGCACGGACATGGGGCTCTAGTGTTGTCTCTGATCCAGGTTTTCAAGTGTGCCATTCACTTGGAGGAGGCACTGGTTCTGGCATGGGGACCCTCCTGATATCAAAGATGAGAGAGGAATACCCAGATAGAATGATGCTCACTTTCTCCGTCTTCCCATCTCCAAAGGTCTCTGACACAGTTGTGGAGCCATATAATGCCACCCTCTCAGTGCACCAGTTGGTAGAGAATGCTGACGAATGCATGGTTCTGGACAATGAGGCTCTTTATGATATTTGTTTCAGGACTCTCAAGCTCAGCACTCCTAGCTTTGGTGACCTGAACCACTTGATCTCTGCGACTATGAGTGGGGTGACTTGCTGCCTGAGGTTCCCTGGCCAGCTGAACTCAGACCTCCGCAAGCTGGCTGTGAATCTGATCCCTGCCAGAGCTAACTCAGCAAATGTGGGATGCCAAGAACATGATGTGTGCGGCTGA 477 50.73 MARTWGSSVVSDPGFQVCHSLGGGTGSGMGTLLISKMREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPARANSANVGCQEHDVCG* 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12336994 12339223 - Vvi18g1117 Vvi18g1117 780820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1117 158 Gene3D Tubulin/FtsZ, GTPase domain 9 141 IPR036525 -
Vvi18g1117 158 Pfam Tubulin/FtsZ family, GTPase domain 14 93 IPR003008 GO:0005525
Vvi18g1117 158 PANTHER TUBULIN 14 142 IPR000217 GO:0005874|GO:0007017
Vvi18g1117 158 SMART Tubulin_4 1 126 IPR003008 GO:0005525
Vvi18g1117 158 PANTHER TUBULIN BETA-6 CHAIN 14 142 - -
Vvi18g1117 158 PRINTS Beta-tubulin signature 34 46 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1117 158 PRINTS Beta-tubulin signature 94 106 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1117 158 PRINTS Beta-tubulin signature 112 121 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1117 158 PRINTS Beta-tubulin signature 127 140 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1117 158 PRINTS Tubulin signature 14 32 IPR000217 GO:0005874|GO:0007017
Vvi18g1117 158 PRINTS Tubulin signature 33 54 IPR000217 GO:0005874|GO:0007017
Vvi18g1117 158 PRINTS Tubulin signature 58 71 IPR000217 GO:0005874|GO:0007017
Vvi18g1117 158 PRINTS Tubulin signature 72 92 IPR000217 GO:0005874|GO:0007017
Vvi18g1117 158 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 22 28 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vvi18g1117 158 SUPERFAMILY Tubulin nucleotide-binding domain-like 14 125 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1117 K07375 TUBB; tubulin beta - zju:107408672 257.684
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1117 . . Bda01g00482 . Bpe02g00346 . Bma04g00249 . . . . . . . Sed08g2609 . Cpe07g00363 Bhi04g00145 Tan02g2079 Cmetu03g2170 . Hepe10g0157 . Lcy13g1909 Cla08g01419 Cam08g1899 Cec08g1475 Cco08g1608 Clacu08g1590 . Cre08g1374 . . . . . . . Cme03g01875 Blo17g00745 . . Bda01g01531 Bpe02g01727 . . . . . . Cma12g00406 . . . . . . . . . . . . . . . . . . . Lsi08g01314 . Chy03g01381 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015897 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 8