Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1118 ATGAGGGAGATCTTGCACGTTCAGGGAGGCCAATGCGGTAACCAAATTGGATCCAAGTACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCTGGGACTATGGACAGTATCAGATCGGGACCGTATGGGCAGATCTTTCGCCCTGATAATTTCGTTTTTGGTCAGTCCGGTGCCGGCAACAATTGGGCCAAGGGTCATTATACTGAGGGGGCGGAGTTGATTGATGCGGTTCTCGATGTTGTTCGCAAGGAGGCTGAGAATTGTGATTGCATGCAAGGACCAACAAGGATTTTTTCCTTTTACCAATTGGGCATGAAACGGGAAATCTTAGGGAAATGGAGTTATGGTAGTAAAAGACTTTCAAGACCATCGATGTTGCCTTGTGGGGCTCGCTAA 396 48.48 MREILHVQGGQCGNQIGSKYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCMQGPTRIFSFYQLGMKREILGKWSYGSKRLSRPSMLPCGAR* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12339224 12341049 - Vvi18g1118 Vvi18g1118 780821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1118 131 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 99 IPR036525 -
Vvi18g1118 131 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vvi18g1118 131 Gene3D Tubulin/FtsZ, GTPase domain 1 114 IPR036525 -
Vvi18g1118 131 PRINTS Beta-tubulin signature 49 60 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1118 131 PRINTS Beta-tubulin signature 69 87 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi18g1118 131 PRINTS Tubulin signature 12 31 IPR000217 GO:0005874|GO:0007017
Vvi18g1118 131 PRINTS Tubulin signature 54 65 IPR000217 GO:0005874|GO:0007017
Vvi18g1118 131 PRINTS Tubulin signature 67 91 IPR000217 GO:0005874|GO:0007017
Vvi18g1118 131 Pfam Tubulin/FtsZ family, GTPase domain 19 93 IPR003008 GO:0005525
Vvi18g1118 131 PANTHER TUBULIN 19 95 IPR000217 GO:0005874|GO:0007017
Vvi18g1118 131 PANTHER TUBULIN 1 20 IPR000217 GO:0005874|GO:0007017
Vvi18g1118 131 PANTHER TUBULIN BETA-2 CHAIN 1 20 - -
Vvi18g1118 131 PANTHER TUBULIN BETA-2 CHAIN 19 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1118 K07375 TUBB; tubulin beta - aof:109824970 182.956
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1118 Blo01g01599 . . . . . . Bma01g02369 Cmo05g00312 Cmo12g00357 . . . Car12g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda08g01218 . . . Bma01g00727 . . . . . Cma05g00309 Car05g00257 . Cpe11g00258 . . . . . . . . . . . . . . . . Csa02g02138 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012642 0 0 2 0 0 0 9 0 0 0 0 0 0 0 0 0 1 0 9 0 0 0 1 0 3 1 0 0 0 3 29