Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1121 ATGTTCTTCTCTAATTATCTAGCCCACCACTTATGTTCGGCTATTACAATGGCTGGAAACTACAGGTTTGCAATGGACCAAAAGGATATCGTTAGATTCCTGGTCACCACGGTTGGAAGTTTCATCCAAGATCAGTTGATCAATAAAGAACAGAGAGCCCAACACAAAGAACAGTGTGCAGAGAGATTAGCAGCTGAAGATGGAAGCTGTGAGAAAGACACAGAAGTTCGATACTCTGATCAAGCAGTATTGGCAAATTTGGATTGGGGGATTGATGCCCTTGAAGAAGCTATCAATACCTCCAACATGGAAACTAAGCTTGCACGATTAGACCATGCAGAAAAAATGTTACAAGTATGTGCAATGTTGAACTCTGACCAGAGAACTGCAGGAGTCCCCAATTTCTACCTCTCTGCTTGGGCCCATCTCAACCTTTCTTACCTGTGGAGACTGCGGGACAATGTTCACAATTCAGTTCTTCACATTCTCGAGATGTTTATTGTTGATCCTTTCTTCTCACGGATTGATTTTGCTCCAGAGCTCTGGAAAGCTCTGTTTCTTCCACATATGAGTTCAATTGTTGGGTGGTATTCAGAAGCAAGGCACAGGATTGTGATGGAAGTGATTCCTGATTCCACTGATTTGTCCTTTACTGCAGATTTCGATCAATTCTTTAATGAGTCCCTGATCTTTTCCATGAGGCCTGATCAAGCAGAGAAAATGCAAAAGCTGGAGCAACTTTATGGAGAATCATTGGATGAGAATACACGGCTTTATTCAAAATATTATATGGATTGCTTGAACTTTGATTCAAACACTAGCAAGAGAGCGATTCCGATGTTGCCAATTGCAGAGCCACCAATGACTCCAATGCATGAGGTCAGCAGGTCAATTCCCGATTATGTAAAATTTGGGCCCATTCTACCTAAGAGTGCTGGGTTTTCTCTAATTCTTAAAGCTAAGGACAATGCAAGAGAAGCTTGCAGATTGAATGTCACTTCCAAATCCTCACAGAACCTGGAGGAGTCTGTTATGTGGGACCTTCAAGAGGAAACGATTGAGGAAAATGAAGATAATTCAGATTATGAGCCTGATAGTGCTTATATGGATTCTGAGGACAAAACATATCAAGTAGTATCTCATAGTAGCATGAAAATGAACATTTATAAGGAAATGGGGCCAAAAGTACAGCCACCAAAAATTAGGAGTCAACTACCTTCTTCGACAAGTTTTTCTTCCACGGACTCCCCTAAAACTTCTCTAAAGATTTCATCTCCAAAATCAGACTCGCATTGTCATAAAGGTCCCACATCCGTATTGCGCCTCTTATCCAGCCGTGCCATGGATTCCACTGTCTCCACCTCCTTGCCTGTGTCTCCACGTTTGTATAAAGATTCCAGCATTAGCTCAGCAGACTCAGATGGTGAAGTGATTGAGCTACCAAGAAGCTGCAGGAAAAACCATGGACACAATCAAAGTATCAGTCATCAAAATCTGAATAGACAAGTATCAGAAAATAGCTCCCTTAATGAAAATGATGAAGGAAGCCAGAGCTGCATTTCTCTCCCATTATCTGATAAACTGACTCCTAGGTCAAGGCCGCCTAAAGATTTTGTCTGCCCCATCACAGGGCAGATTTTTAGTGATGCAGTTACCCTTGAAACAGGTCAAACATATGAAAGAAAAGCAATTCAAGAATGGCTGAAAAGAGGAAACACAACATGTCCCATTACACGGCAACCTCTATCTGCCAGCTCACTGCCCAAAACAAACTATGTTTTGAAGAGATTAATCACTACTTGGAAAGAACAATATCCTGATGTTGCTCAGGAGTTCTCTTACCCTGAAACACCAAGAAACTCATTCAGCCCCCCGTCCACAAAAGAAATTATGTTGGCATCTTCTCCATCATGTAATCCCCCCGACCATAAGAAGTCAGATGATTGTACTAATCAGAAGTGCAAAAGATTTATGCAAACAGTGGTATCTACTTCACCAACCAGTGTGATATCTCAAGCTGCTACTGAAGCGGTTATCAATGGGTTAAAACCCTATGTTTTGTGTCTCTGTAATTCAGATGATTTACAAGAGTGTGAAGCAGCTGTGCTGGCAATAGCCAAGATGTGGAAAGACTCAAAGGCTGATCCGGGAATTCATTCTTATTTGTCCGAACCAACAATTGTGAATGGGCTTGTGGAAATACTATCAGCTTCCATGAACAGAGAAGTTCTCAGAACATCAATTCACATTCTTTCTGTGCTAATATTTGCTGATGAAAGTGTGGGAGAGACTCTTACCAATGTAGATTCTGATTTTGATTGTCTGGCTGCTCTACTAAAGAAAGGTCTTGCAGAGGCTGCTGTTCTTATATACCAGCTGAGGCCAGCATTCACTCAGCTTTCAGCTCGCAACTTTATACCCTCTCTAGTACACCTAATTCTGAACAAAAATGACGAATCGGATAATCTTCTGTTAGTAATGGAGCCCAAGGATGCTGCTATAGCATTGCTTGAGCAGATTTTGATGGGAGGGGATGAAAACAGCAGATCCCTCAATGCTATGAGTGTTATCTCTGCAAACGGGATTCCTGCATTAATCAAGTGTTTGGATAAGGTAGAAGGAAGGCAGGCCATCGTATCCATCCTTTTATGTTGTATCCATGCAGATAGAAGTTGCAGGAATTTGATAGCAAATAGAATCGATCTGTCTTCCGTGCTTGAATTATTTCATACTGGAGATGATTATGTTAGAGGCATATGCACAAAGTTTCTCTCTGAGCTAGTTCAGTTAAACAGGAGGATATTCTGCAACCAGATCTTGAAGATAATTAAAGATGAAGGAGCTTTTAGTACCATGCACACATTTCTTGTGTATCTACAAATGGCCCCCATGGAGCAGCAACCTGCAATTGCTTCTCTTCTTCTTCAGCTTGATCTTCTGGTTGAGCCTCGAAAGATGAGCATTTACAGGGAAGAAGCTATAGAGGCACTAGTTGAAGCACTTCACAAAAAAGACTTTCCTCATTCTCAAATCATGGCTCTAGATGCTTTATTATCTCTTTCTGGACATCTGACTACCTCAGGGAAGTCCTACACTGAAGCCTGGTTACTCAAGATCGCAGGATATGATCAACCTTACCATGCTTTAATGAAGTCGGAGAGGCTGAAAATATATGAAAATGAACTGACAGAGACAACGGAAGAGGAAGAGAAAGCTGTCACTTCTTGGCAAAAAAGAGTAGTTTTTGTTCTTTGCAACCATGAAAAAGGATCCATCTTTAAAGCCTTGGAGGAATGCCTGAAGAGTAATTCTTTAGAGATAGCAAAGTCATGCCTTGTTGTTGCCACATGGCTTACATACATGCTTTATCATCTTCCTGACACTGGTGTAAGAAATGTTGCTCACAAGTCATTCCTCGAGCCATTCATCAATGTCCTCCAATCATCAAAGAATCTTGAGGAGAAGATTTTGGCAACCCTTGCTTTGAATTGCTTCCTTAATGATCCAGGTGCATTAGAAGAACTGGGAGCATATGCCAAGTGCATGTATAAAACCTTGAGAAAGCTTAAAAAGAATTCAGTGGTTGTAAGTGACATGCTAAAAGCCTTGATAAAGCTGCCTTCTGTTGATCCAACAGAGTTGTGGTGTTGTGATGAAGTGGTTGAGCTAGATTCATGCTCAAACGGTGGGATTCTGTCTTTGCTTCCTCTAAAAAGTTGGGTTCTGAGCGGCCATTCTGATGGAACTATAAAGGTATGGGATGCTGGGAAGAGAGACTTAAGGTTGATTCAAGAAGTTCGTGAACACACAAAGGCTGTCACATGCCTCTATGCCTCATCTTCAAGTGACAAGTTATATAGTGGTTCCTTAGACAAAACAATTCGGGTCTGGACGGTCAAACCAGAAGAAATTCACTGTGTTCAGGTTCATGATGTGAAGGAGGCGGTATACCAGTTGACAGCTAATGCCAGTTTTGCATGCTTCTCTTCTCAAGGAACTGGAGTCAATGTCTACAGTTGGTCTGGGGTTCCAAAACATATAAACTTTAACAAAAATGTCAAGAGCCTTGACATGGCAGAGGATAGACTGTATTGCGGTTGCACTGGTTACAGCATCCAGGAGGTTGATTTGTGTAAATCCACTACAAATACATTTTACTCTGGTGCAAGAAAATTGCTTGGTAAACAAACAATATATTCCTTGCGGATTCATGATGGTTTACTCTATGCTGGCGGTTCCTCAGTGGATGGAACTGCAGGGAAGGTGTTCTCCCTCTCGACCAAGGCCTTAACTGGGTCTTTCTTGACTGGATTGGACATCCAGCGCTTAGCTGTGAATAGTGACTTTATATTCACTGCCAGTAAATCTGGGATCATTGAGGTGTGGTTTAAGGAAACAGTGACAAGAGTAGCTTCCATTAAAATCGGTGGTCATGGACATGCGAAGATTGCATCCTTGGCATCAGATACAGATGGAGAAATGCTTTTTGCTGGTTTCCTTGATGGCAAGATCCAGGCTTGGGCGCTCGACTGA 4533 41.8 MFFSNYLAHHLCSAITMAGNYRFAMDQKDIVRFLVTTVGSFIQDQLINKEQRAQHKEQCAERLAAEDGSCEKDTEVRYSDQAVLANLDWGIDALEEAINTSNMETKLARLDHAEKMLQVCAMLNSDQRTAGVPNFYLSAWAHLNLSYLWRLRDNVHNSVLHILEMFIVDPFFSRIDFAPELWKALFLPHMSSIVGWYSEARHRIVMEVIPDSTDLSFTADFDQFFNESLIFSMRPDQAEKMQKLEQLYGESLDENTRLYSKYYMDCLNFDSNTSKRAIPMLPIAEPPMTPMHEVSRSIPDYVKFGPILPKSAGFSLILKAKDNAREACRLNVTSKSSQNLEESVMWDLQEETIEENEDNSDYEPDSAYMDSEDKTYQVVSHSSMKMNIYKEMGPKVQPPKIRSQLPSSTSFSSTDSPKTSLKISSPKSDSHCHKGPTSVLRLLSSRAMDSTVSTSLPVSPRLYKDSSISSADSDGEVIELPRSCRKNHGHNQSISHQNLNRQVSENSSLNENDEGSQSCISLPLSDKLTPRSRPPKDFVCPITGQIFSDAVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSASSLPKTNYVLKRLITTWKEQYPDVAQEFSYPETPRNSFSPPSTKEIMLASSPSCNPPDHKKSDDCTNQKCKRFMQTVVSTSPTSVISQAATEAVINGLKPYVLCLCNSDDLQECEAAVLAIAKMWKDSKADPGIHSYLSEPTIVNGLVEILSASMNREVLRTSIHILSVLIFADESVGETLTNVDSDFDCLAALLKKGLAEAAVLIYQLRPAFTQLSARNFIPSLVHLILNKNDESDNLLLVMEPKDAAIALLEQILMGGDENSRSLNAMSVISANGIPALIKCLDKVEGRQAIVSILLCCIHADRSCRNLIANRIDLSSVLELFHTGDDYVRGICTKFLSELVQLNRRIFCNQILKIIKDEGAFSTMHTFLVYLQMAPMEQQPAIASLLLQLDLLVEPRKMSIYREEAIEALVEALHKKDFPHSQIMALDALLSLSGHLTTSGKSYTEAWLLKIAGYDQPYHALMKSERLKIYENELTETTEEEEKAVTSWQKRVVFVLCNHEKGSIFKALEECLKSNSLEIAKSCLVVATWLTYMLYHLPDTGVRNVAHKSFLEPFINVLQSSKNLEEKILATLALNCFLNDPGALEELGAYAKCMYKTLRKLKKNSVVVSDMLKALIKLPSVDPTELWCCDEVVELDSCSNGGILSLLPLKSWVLSGHSDGTIKVWDAGKRDLRLIQEVREHTKAVTCLYASSSSDKLYSGSLDKTIRVWTVKPEEIHCVQVHDVKEAVYQLTANASFACFSSQGTGVNVYSWSGVPKHINFNKNVKSLDMAEDRLYCGCTGYSIQEVDLCKSTTNTFYSGARKLLGKQTIYSLRIHDGLLYAGGSSVDGTAGKVFSLSTKALTGSFLTGLDIQRLAVNSDFIFTASKSGIIEVWFKETVTRVASIKIGGHGHAKIASLASDTDGEMLFAGFLDGKIQAWALD* 1511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12363303 12376914 - Vvi18g1121 Vvi18g1121 780824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1121 1510 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 1510 - -
Vvi18g1121 1510 Gene3D - 1232 1510 IPR015943 GO:0005515
Vvi18g1121 1510 SUPERFAMILY RING/U-box 533 606 - -
Vvi18g1121 1510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 534 607 IPR013083 -
Vvi18g1121 1510 SUPERFAMILY WD40 repeat-like 1236 1509 IPR036322 GO:0005515
Vvi18g1121 1510 MobiDBLite consensus disorder prediction 401 432 - -
Vvi18g1121 1510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1266 1300 - -
Vvi18g1121 1510 ProSiteProfiles U-box domain profile. 533 608 IPR003613 GO:0004842|GO:0016567
Vvi18g1121 1510 Coils Coil 1506 1510 - -
Vvi18g1121 1510 SMART Ubox_2 537 601 IPR003613 GO:0004842|GO:0016567
Vvi18g1121 1510 MobiDBLite consensus disorder prediction 393 436 - -
Vvi18g1121 1510 Gene3D - 669 1222 IPR011989 -
Vvi18g1121 1510 ProSiteProfiles Trp-Asp (WD) repeats profile. 1241 1254 IPR001680 GO:0005515
Vvi18g1121 1510 SUPERFAMILY ARM repeat 684 1182 IPR016024 -
Vvi18g1121 1510 MobiDBLite consensus disorder prediction 451 473 - -
Vvi18g1121 1510 ProSiteProfiles Trp-Asp (WD) repeats profile. 1266 1300 IPR001680 GO:0005515
Vvi18g1121 1510 CDD RING-Ubox_PUB 538 580 IPR045210 -
Vvi18g1121 1510 MobiDBLite consensus disorder prediction 451 474 - -
Vvi18g1121 1510 MobiDBLite consensus disorder prediction 486 535 - -
Vvi18g1121 1510 MobiDBLite consensus disorder prediction 487 525 - -
Vvi18g1121 1510 Pfam U-box domain 535 604 IPR003613 GO:0004842|GO:0016567
Vvi18g1121 1510 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 1510 - -
Vvi18g1121 1510 Pfam WD domain, G-beta repeat 1262 1297 IPR001680 GO:0005515
Vvi18g1121 1510 Pfam WD domain, G-beta repeat 1233 1254 IPR001680 GO:0005515
Vvi18g1121 1510 SMART WD40_4 1216 1254 IPR001680 GO:0005515
Vvi18g1121 1510 SMART WD40_4 1427 1463 IPR001680 GO:0005515
Vvi18g1121 1510 SMART WD40_4 1259 1298 IPR001680 GO:0005515
Vvi18g1121 1510 SMART WD40_4 1466 1508 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1121 - - - vvi:100245471 2914.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39